Locus 115

Sequence ID 4_DroMel_CAF1
Location 823,306 – 823,411
Length 105
Max. P 0.694600
window178

overview

Window 8

Location 823,306 – 823,411
Length 105
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 73.44
Mean single sequence MFE -33.92
Consensus MFE -17.35
Energy contribution -15.38
Covariance contribution -1.97
Combinations/Pair 1.59
Mean z-score -1.69
Structure conservation index 0.51
SVM decision value 0.34
SVM RNA-class probability 0.694600
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 823306 105 + 1281640
CGGGAAUGAGCUGCAGGAGCUGUUGAGCAUUGGGCAUUGGCGGCUGUAGGAAGGCCGGAAGGAACGGCAUCAAGUUUCCGGAAGAU--ACGGAAACUGCCUGUUGAU
((((..(((.(((((...(((((..(((.....)).)..))))))))))....((((.......)))).)))((((((((......--.)))))))).))))..... ( -39.00)
>DroPse_CAF1 2739 99 + 1
CAGGCAUUAGUUGUAUCAGCUGCUGUGCA---GGUACUGGUGGACGCAGAAAAGCUGGAAGAAACGGUACCAAAUUGCCGGGACUA--ACAGCAGUUGCUUGAU---
((((((...(((((.((((((.(((((((---(...))).....)))))...))))))......(((((......)))))......--)))))...))))))..--- ( -31.70)
>DroEre_CAF1 2096 101 + 1
CGGGAAUUAGCUGCAGGAGCUGUUGAGCA---GGCAUUGGGGGCUGUAGGAAGGCCGGAAGGAAUGGCAUAAAGUUUCCGGAAUUU--ACGGAAACUGCCUGUUGC-
.........((.(((((.((((((..(((---(.(......).)))).......((....))))))))....((((((((......--.)))))))).))))).))- ( -35.30)
>DroWil_CAF1 2167 102 + 1
CGGGAAUCAGGUGCAUCAGUUGCUGUGCACUGGGCACUGGUGGGCGCAGGAAGGCUGGGAGGAAUGGUACCAAGUUUCCAGAGCUGGUUUGG-UGCUGC-UGCU---
(((..(((((.(((.(((((.((...))))))))))))))).(((((..((.((((.(((((..((....))..)))))..))))..))..)-)))).)-))..--- ( -34.60)
>DroYak_CAF1 1761 101 + 1
CGGGAAUUAGCUGCAGGAGCUGUUGAGCA---GGAAUUGGGGGCUGUAGGAAGGCCGGAAGGAAUGGCAUCAAGUUUCCGGAAGUU--ACGGAACCUGCCUGUUGG-
.......(((((.....)))))...((((---((....(((..((((((.....(((((((...((....))..)))))))...))--))))..))).))))))..- ( -31.20)
>DroPer_CAF1 2370 99 + 1
CAGGCAUUAGUUGUAUCAGCUGCUGUGCA---GGUACUGGUGGACGCAGAAAAGCUGGAAGAAACGGUACCAAAUUGCCGGGACUA--ACAGCAGUUGCUUGAU---
((((((...(((((.((((((.(((((((---(...))).....)))))...))))))......(((((......)))))......--)))))...))))))..--- ( -31.70)
>consensus
CGGGAAUUAGCUGCAGCAGCUGCUGAGCA___GGCACUGGUGGCCGCAGGAAGGCCGGAAGGAACGGCACCAAGUUUCCGGAACUU__ACGGAAGCUGCCUGUU___
((((......((((.....(((((..((.....))...)))))..))))....((((.......))))....((((((((.........)))))))).))))..... (-17.35 = -15.38 +  -1.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:59 2006