Locus 113

Sequence ID 4_DroMel_CAF1
Location 808,378 – 808,495
Length 117
Max. P 0.729536
window173

overview

Window 3

Location 808,378 – 808,495
Length 117
Sequences 3
Columns 117
Reading direction forward
Mean pairwise identity 82.80
Mean single sequence MFE -14.68
Consensus MFE -10.77
Energy contribution -11.43
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.90
Structure conservation index 0.73
SVM decision value 0.42
SVM RNA-class probability 0.729536
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 808378 117 + 1281640
CUUCAAAAACAAAAAACAAACAAAUGGCUUACAAUUACCAAACCCCAUAACUUGGGUUAAGGGAUCAUCUCACAAUUGAAAAAAAGUAAACUAUAGUACUAUCCUUCAGCACCAAAA
.......................((((.................))))...(((((((.((((((....(((....))).....((((........)))))))))).))).)))).. ( -13.23)
>DroSec_CAF1 19144 109 + 1
CUUCAA-------CAACAGACGAACGGUUAAAAAUUACCAAUUCCCAUAACUUGAGUUAAGGGAUCAUUUCACAAUUGAAACAAAGUUAACU-UACUACUUAUUUUCAUCUCAAAAA
......-------....(((.(((.(((........)))...((((.((((....)))).))))....))).....(((((..((((.....-....))))..))))))))...... ( -15.50)
>DroSim_CAF1 22511 109 + 1
CUUCAA-------CAACAGACGAACGGUUUAAAAUUACCAAUUCCCAUAACUUGAGUUAAGGGAUCAUUUCACAAUUGAAACAAAGUUAACU-UACUACUUAUUUUCACCUCAAAAA
......-------........(((.(((........)))...((((.((((....)))).))))....))).....(((((..((((.....-....))))..)))))......... ( -15.30)
>consensus
CUUCAA_______CAACAGACGAACGGUUUAAAAUUACCAAUUCCCAUAACUUGAGUUAAGGGAUCAUUUCACAAUUGAAACAAAGUUAACU_UACUACUUAUUUUCACCUCAAAAA
.(((((...................(((........)))...((((.((((....)))).))))...........)))))..................................... (-10.77 = -11.43 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:54 2006