Locus 112

Sequence ID 4_DroMel_CAF1
Location 806,885 – 806,981
Length 96
Max. P 0.635128
window172

overview

Window 2

Location 806,885 – 806,981
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 77.22
Mean single sequence MFE -21.30
Consensus MFE -9.97
Energy contribution -12.31
Covariance contribution 2.34
Combinations/Pair 1.24
Mean z-score -2.02
Structure conservation index 0.47
SVM decision value 0.21
SVM RNA-class probability 0.635128
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 806885 96 - 1281640
CUCCUUCGCAGCAAAUAGUUUCAGAUUUGCAUUCAAAUAUCGACUCUGCGGAGCCUCCGCUUUCGGGUGAACAUACCCUACUUCAUCCGAACUUCU
...((((((((.....((((....(((((....)))))...))))))))))))........((((((((((..........))))))))))..... ( -24.80)
>DroSec_CAF1 17864 96 - 1
CUCCUUCGCAGCAAAUAGUUUCAGAUAUGCAUUCAAAUAUCGACUCUGCGGAGCCUCCGCUUUUGGGUGAACAUACCCUACUUCAUCCGAACUUCU
...((((((((.....((((...(((((........)))))))))))))))))........((((((((((..........))))))))))..... ( -23.80)
>DroSim_CAF1 21228 96 - 1
CUCCUUCGCAGCAAAUAGUUUCAGAUAUGCAUUCAAAUAUCGACUCUGCGGAGCCUCCGCUUUUGGGUGAACAUACCCUACUUCAUCCGAGCUUCU
...((((((((.....((((...(((((........))))))))))))))))).....((((..(((((((..........))))))))))).... ( -25.00)
>DroEre_CAF1 18678 96 - 1
UUCCUUCGCAGGAUAUAGUUACAGAUAUGCAUUCUAAUAUCGAUUCUGCGGAGCCUCCGCCUUUGGGUAUACAAACCCGGCUUCAUCCGAACUUCU
...(((((((((((.........(((((........))))).))))))))))).....(((...((((......)))))))............... ( -26.10)
>DroYak_CAF1 23018 96 - 1
CUCCUUCGCAGGAAAUAGUUUCAGAUAAGCAUUCAAAUAUGGAUUCUGCGGAUCCUCCGCCUUUGAGUGUAUAUACCCGGCUUCAUCCGAACUUCU
.((((....))))...(((((..(((((((......(((((.((((.((((.....))))....)))).))))).....)))).))).)))))... ( -23.00)
>DroMoj_CAF1 26315 81 - 1
CGACAUUACAGCGUGUUAUCUCUAAUUUGCACACAAAUAUUGAUUCCUCUGAGCCAAAACUU---------------CAUCAUCAAACCAACUUCU
........(((...(..(((....(((((....)))))...)))..).)))...........---------------................... (  -5.10)
>consensus
CUCCUUCGCAGCAAAUAGUUUCAGAUAUGCAUUCAAAUAUCGACUCUGCGGAGCCUCCGCUUUUGGGUGAACAUACCCUACUUCAUCCGAACUUCU
...((((((((.....((((...(((((........)))))))))))))))))........((((((((..............))))))))..... ( -9.97 = -12.31 +   2.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:53 2006