Locus 111

Sequence ID 4_DroMel_CAF1
Location 792,633 – 792,734
Length 101
Max. P 0.585218
window171

overview

Window 1

Location 792,633 – 792,734
Length 101
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 77.38
Mean single sequence MFE -21.04
Consensus MFE -15.68
Energy contribution -15.27
Covariance contribution -0.41
Combinations/Pair 1.27
Mean z-score -0.91
Structure conservation index 0.75
SVM decision value 0.10
SVM RNA-class probability 0.585218
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 792633 101 + 1281640
UUA------AAUUCAA---UU-UUCC--CAGGAGAAUGGGUUACGCCUGAGCAGGCUCAACUCGCCCACAAUUUUCUUUACUCAGGAGGUAAAUGCUAAUAAU-GAAUCAAAUC--
...------.((((((---((-(((.--...))))))(((((..((((....))))..)))))((.....(((((((......)))))))....))......)-))))......-- ( -20.20)
>DroPse_CAF1 1531 99 + 1
UCU------AAUUUAA---AUUUUCU--CAGGAGAAUGGGUUACGCCUGAGCAGGCAGAGCUUGCCCACAAUUUCCUUUACUCAGGAGGUAAUUUAUAAUC----AAUUGAACU--
...------....(((---(((.(((--(..(((...(((.......((.((((((...)))))).))......)))...)))..)))).)))))).....----.........-- ( -22.72)
>DroEre_CAF1 2067 102 + 1
UGA------UAUUUAA---CUUUUCC--CAGGAGAAUGGGUUACGCCUGAGCAGGCUCAACUCGCCCACAAUUUUCUUUACUCAGGAGGUAAAUGAUAAUAAU-GAAAUAAAUC--
...------((((((.---(((((..--.((((((((((((...((((....)))).......)))))...))))))).....))))).))))))........-..........-- ( -18.60)
>DroWil_CAF1 1468 110 + 1
UGUAAUAAAAAUUAAA---CAUUUCCCUUAGGAGAAUGGGUUACGCCUGAACAGGCAGAACUUGCGCACAACUUCCUUUACUCAGGAGGUAAUUGACUAUAAU-AAAAUGAAAC--
.(((............---((((..((...))..))))((((..((((....))))..))))))).....(((((((......))))))).............-..........-- ( -21.80)
>DroMoj_CAF1 3090 103 + 1
UCA------AAUUCAAUGUCU-UAUC--CAGGAGAAUGGGUUACACCUGAGCAGGCCGAACUUGCACACAACUUCCUUUACUCAGGAGGUAAUUUUUUAUAAAUAAAC----UCUC
...------...(((.(((..-.(((--((......))))).)))..)))(((((.....))))).....(((((((......)))))))..................----.... ( -20.20)
>DroPer_CAF1 1534 99 + 1
UCU------AAUUUAA---AUUUUCU--CAGGAGAAUGGGUUACGCCUGAGCAGGCAGAGCUUGCCCACAAUUUCCUUUACUCAGGAGGUAAUUUAUAAUC----AAUUGAACU--
...------....(((---(((.(((--(..(((...(((.......((.((((((...)))))).))......)))...)))..)))).)))))).....----.........-- ( -22.72)
>consensus
UCA______AAUUUAA___CUUUUCC__CAGGAGAAUGGGUUACGCCUGAGCAGGCAGAACUUGCCCACAAUUUCCUUUACUCAGGAGGUAAUUGAUAAUAAU__AAUUGAAUC__
....................((((((....)))))).(((((..((((....))))..))))).......(((((((......))))))).......................... (-15.68 = -15.27 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:52 2006