Locus 108

Sequence ID 4_DroMel_CAF1
Location 770,659 – 770,768
Length 109
Max. P 0.634449
window165

overview

Window 5

Location 770,659 – 770,768
Length 109
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 94.80
Mean single sequence MFE -29.27
Consensus MFE -25.47
Energy contribution -25.70
Covariance contribution 0.23
Combinations/Pair 1.07
Mean z-score -2.00
Structure conservation index 0.87
SVM decision value 0.21
SVM RNA-class probability 0.634449
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 770659 109 - 1281640
UCCAAGCGUCUUGCAGUACAUACACAGUAAGUGCGUUGGCAGUUAAGCUGAUGCGAGUUUUUCUAAGCAAUUUCCGACUGUCAGCGCUGAUGUAAAUCAAAAUGAUUCA
.....(((((..((.((((.(((...))).))))((((((((((..((....))..((((....)))).......)))))))))))).))))).((((.....)))).. ( -30.20)
>DroSim_CAF1 1519 109 - 1
UCUAAGCGUCUUGCAGUACAUACACAGUAAGUGCGUUGGCAGUUAAGCUGAUGCGAGAUUUUCUAAGCAAUUUCCGACUGUCAGCGCUGAUGUAAAUCAAAAUCAUUCA
.....(((((..((.((((.(((...))).))))((((((((((..((....))((((((........)))))).)))))))))))).)))))................ ( -30.50)
>DroYak_CAF1 1130 109 - 1
UACAAGUGUCUUGCAGUACAUACACAGUAAAUGCGUUGGCAGUUAAGCAGAUGCGAGUUUUUCUAAGCAAUUUCCAACUGUCAGCGCUGAUGUAAAUCAAAAUUAUUCA
((((.((((..((.....)).)))).......((((((((((((..((....))..((((....)))).......))))))))))))...))))............... ( -27.10)
>consensus
UCCAAGCGUCUUGCAGUACAUACACAGUAAGUGCGUUGGCAGUUAAGCUGAUGCGAGUUUUUCUAAGCAAUUUCCGACUGUCAGCGCUGAUGUAAAUCAAAAUCAUUCA
.....(((((..((.((((.(((...))).))))((((((((((..((....))..((((....)))).......)))))))))))).)))))................ (-25.47 = -25.70 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:45 2006