Locus 107

Sequence ID 4_DroMel_CAF1
Location 764,149 – 764,263
Length 114
Max. P 0.996443
window164

overview

Window 4

Location 764,149 – 764,263
Length 114
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 90.74
Mean single sequence MFE -23.12
Consensus MFE -19.96
Energy contribution -20.20
Covariance contribution 0.24
Combinations/Pair 1.06
Mean z-score -2.28
Structure conservation index 0.86
SVM decision value 2.70
SVM RNA-class probability 0.996443
Prediction RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 764149 114 + 1281640
AUGUGUCAUUUCACAAAGAGUUUUCCACUCAAAAACAUCGCAC--AUACGGCUAAAUGUUUUUACCUGCAUAAAUUAUAAGCGAAGUUUAUGCAAAAA-AAAGCUUGAAAUAAAAGU
.((((......))))..(((((((......((((((((.((..--.....))...))))))))...((((((((((........))))))))))....-)))))))........... ( -21.30)
>DroSec_CAF1 20672 113 + 1
AUGUGUCAUUUCACAAAGAGUUUUCCACUCAAAAACAUCGCAC--AUACGGCUAAAUGUUUUUACCUGCAUAAAUUAUAAGCGAAGUUUAUGCAAAA--AAAGCUUGACAUAAAAGU
.(((((((.........((((.....))))((((((((.((..--.....))...))))))))...((((((((((........))))))))))...--......)))))))..... ( -24.30)
>DroSim_CAF1 21135 113 + 1
AUGUGUCAUUUCACAAAGAGUUUUCCACUCAAAAACAUCGCAC--AUACGGCUAAAUGUUUUUACCUGCAUAAAUUAUAAGCGAAGUUUAUGCAAAA--AAAGCUUGACAUAAAAGU
.(((((((.........((((.....))))((((((((.((..--.....))...))))))))...((((((((((........))))))))))...--......)))))))..... ( -24.30)
>DroEre_CAF1 20009 117 + 1
AUGUGUCAUCCCACGAAGAGUUUUCCACUUAAAAACAUCGCAUCUGUACGGCUUAAUGUUUUUACCUGCAUAAAUUAUAAGCGAAGUUUAUGCAAAAGAAAAUGUUCAUAUUUAAAU
..(((......)))(((..((((((....(((((((((.((.........))...)))))))))..((((((((((........))))))))))...)))))).))).......... ( -22.10)
>DroYak_CAF1 18297 114 + 1
AUGUGUCAUUUCACGAAGAGUUUUCCACUUAAAAACAUCGCAUUUGUACGGCCUAAUGUUUUUAACUGCAUAAAUUAUAAGCGAAGUUUAUGCAAAA---AAGCUUGACAUAAAAAU
.(((((((..........((((((....((((((((((.((.........))...)))))))))).((((((((((........))))))))))..)---))))))))))))..... ( -23.60)
>consensus
AUGUGUCAUUUCACAAAGAGUUUUCCACUCAAAAACAUCGCAC__AUACGGCUAAAUGUUUUUACCUGCAUAAAUUAUAAGCGAAGUUUAUGCAAAA__AAAGCUUGACAUAAAAGU
.(((((((.........((((.....))))((((((((.((.........))...))))))))...((((((((((........))))))))))...........)))))))..... (-19.96 = -20.20 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:44 2006