| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 761,666 – 761,783 |
| Length | 117 |
| Max. P | 0.562059 |
| Location | 761,666 – 761,783 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.92 |
| Mean single sequence MFE | -24.53 |
| Consensus MFE | -16.88 |
| Energy contribution | -17.33 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.562059 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 761666 117 - 1281640 CAGCUGUGCUAAGUACAAAGAUGCAUCGUUCUAAGU---AUGUAGCUGUACGUCAAAUGUGAGACGCAAAGGCGUACACAUAAAAAACCUUUUUUUAAAUAAAAUAAGAAAGGAUGGAAA ...((((((((.((((..(((........)))..))---)).))))((((((((...((((...))))..)))))))).........((((((((..........))))))))))))... ( -26.80) >DroSec_CAF1 18138 115 - 1 -----AUACUAAGUACAAAGAUGCAGCGUUCUAAGUACUAUGUAGCUGUACGUCAAAUGUAAGUCGCAAUGGCGUAAACACAAAAAACCUCCUUUUAAAUUAAAUACAAAAGGAUGGAAA -----.(((..(((((..(((........)))..)))))..)))....(((((((..(((.....))).)))))))...........(((((((((...........))))))).))... ( -23.00) >DroSim_CAF1 18573 115 - 1 -----AUACUAAGUACAUAGAUGCCGCGUUCUAAGUACUAUGUAGCUGUACGUCAAAUGUAAGUCGCAAUGGCGUUAUCACAAAAAACCUCCUUUUAAAUUAAAUACAAAAGGAUGGAAA -----.(((..(((((.((((........)))).)))))..)))(.((.((((((..(((.....))).))))))...)))......(((((((((...........))))))).))... ( -23.80) >consensus _____AUACUAAGUACAAAGAUGCAGCGUUCUAAGUACUAUGUAGCUGUACGUCAAAUGUAAGUCGCAAUGGCGUAAACACAAAAAACCUCCUUUUAAAUUAAAUACAAAAGGAUGGAAA ......(((..(((((..(((........)))..)))))..)))....((((((...(((.....)))..))))))...........(((((((((...........))))))).))... (-16.88 = -17.33 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:40 2006