| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 747,259 – 747,364 |
| Length | 105 |
| Max. P | 0.712374 |
| Location | 747,259 – 747,364 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 77.36 |
| Mean single sequence MFE | -16.67 |
| Consensus MFE | -10.13 |
| Energy contribution | -11.13 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.712374 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 747259 105 - 1281640 GAAAAU-UUUUACAAACUUAACGUUUCCCAAAUGAGUAUUUAAAAAACUAUAGAAGUCCGACUCUUUUAAGGACAUUUAUAAAUUUUUAAGUGGACUGUAUGUACU ......-...((((.((....((((.....))))..((((((((((..((((((.((((...........)))).))))))..))))))))))....)).)))).. ( -17.60) >DroSec_CAF1 3902 81 - 1 GCAUAUUUUUUACAAACUUAUUGUUUCCCAAAUGAGUAUUUAAAAAACUAUAGAAGUCCCACCCUCUUAUGGACAUUUAUU------------------------- .....(((((((.(.(((((((........))))))).).)))))))..(((((.((((...........)))).))))).------------------------- ( -12.20) >DroSim_CAF1 3940 106 - 1 GCAUAUUUUUUACAAACUUAUUGUUUCCCAAAUGAGUAUUUAAAAAACUAUAGAAGUCCCACUCUCUUAUGGACAUUUAUUAAGUUUUAAAUGGACUGUAUGUACU ((((((..(((....(((((((........)))))))((((((((....(((((.((((...........)))).)))))....)))))))))))..))))))... ( -20.20) >consensus GCAUAUUUUUUACAAACUUAUUGUUUCCCAAAUGAGUAUUUAAAAAACUAUAGAAGUCCCACUCUCUUAUGGACAUUUAUUAA_UUUUAA_UGGACUGUAUGUACU .....(((((((.(.(((((((........))))))).).)))))))..(((((.((((...........)))).))))).......................... (-10.13 = -11.13 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:39 2006