| Sequence ID | 4_DroMel_CAF1 |
|---|---|
| Location | 733,571 – 733,665 |
| Length | 94 |
| Max. P | 0.985966 |
| Location | 733,571 – 733,665 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 69.09 |
| Mean single sequence MFE | -28.30 |
| Consensus MFE | -13.46 |
| Energy contribution | -14.02 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.48 |
| SVM decision value | 2.02 |
| SVM RNA-class probability | 0.985966 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>4_DroMel_CAF1 733571 94 - 1281640 CCAAUCCG-----GCACCAGUUCCCGCUUUCCUGGAUUGCAUUCGUUUCCUUUGGGGACAACAAGUGCAUGCGCAAGCUGUACGCCAAAGGAUACCUUU-------- .(((((((-----(....(((....)))...)))))))).....((.(((((((((.....)..(((((.((....))))))).)))))))).))....-------- ( -32.90) >DroSec_CAF1 21247 76 - 1 CCAAUCCG-----G------------------UGGAUUGCAUUCGUUUCCUUUGGGGACAACAAGUGCAUGCGCAAGCUGCACGCCAAAGGAUACCUUU-------- .((((((.-----.------------------.)))))).....((.(((((((((.....)..(((((.((....))))))).)))))))).))....-------- ( -30.00) >DroSim_CAF1 9924 76 - 1 CCAAUCCG-----G------------------UGGAUUGCAUUCGUUUCCUUUGGGGACAACAAGUGCAUGCGCAAGCUGCACGCCGAAGGAUACCUUU-------- .((((((.-----.------------------.)))))).....((.(((((((((.....)..(((((.((....))))))).)))))))).))....-------- ( -29.70) >DroEre_CAF1 22980 101 - 1 CCAAUCCG-----GAAACUGCGUCCGCUUU-CUGGAGAGCAUUCGCUUCCUUUGGGGACAACAAGUGCAUGCGCAAGCUUCACGCCAAAGGAAUCCUUUGCCAUGUG ....((((-----((((..((....)))))-)))))(.(((...(.((((((((((.....)..(((...((....))..))).))))))))).)...))))..... ( -33.20) >DroYak_CAF1 30127 94 - 1 CCAAUCCG-----GAAACUGAGCCCGCUUUACUGGAGAGCAUUCGUUUCCUUUGGGGACAACAAGUGCAUGCGCAAGCUUCAAGCCAAAGGAAACCUUU-------- ....((.(-----....).))....(((((.....)))))....((((((((((((.((.....)).)..((....))......)))))))))))....-------- ( -28.80) >DroPer_CAF1 25422 84 - 1 AAUAUCUGGGCUUAAAGCUAAGUAAUCU-------CUAGCAGUCAUUUCUUU---GGACAACAAGUGCA-GCGCAG----CAAGGAAAUGGAAGAUUUA-------- ...((((.........((((((....))-------.))))..((((((((((---(.((.....))((.-..))..----))))))))))).))))...-------- ( -15.20) >consensus CCAAUCCG_____GAA_CUG_G_CCGCU____UGGAUAGCAUUCGUUUCCUUUGGGGACAACAAGUGCAUGCGCAAGCUGCACGCCAAAGGAAACCUUU________ ....(((...............................(((((.((((((.....))).))).)))))..((....))...........)))............... (-13.46 = -14.02 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:37 2006