Locus 10

Sequence ID	4_DroMel_CAF1
Location	154,725 – 154,832
Length	107
Max. P	0.837038

overview

Window 6

Location	154,725 – 154,832
Length	107
Sequences	4
Columns	117
Reading direction	forward
Mean pairwise identity	84.45
Mean single sequence MFE	-29.40
Consensus MFE	-20.41
Energy contribution	-21.72
Covariance contribution	1.31
Combinations/Pair	1.12
Mean z-score	-2.04
Structure conservation index	0.69
SVM decision value	0.74
SVM RNA-class probability	0.837038
Prediction	RNA

Download alignment: ClustalW | MAF

>4_DroMel_CAF1 154725 107 + 1281640
AAGUGUCGAAGAAUUUA-UAAUUGCCUUCACUUGUAAUUUUAAAUUGUUCAGAAAUGUUCGCAAGUCAGAGCAAGGCUUGUGA---------UUCUCCGAGUGAGACUGUGCACCUA
.(((.(((((.((((((-.((((((........)))))).)))))).)))((((....(((((((((.......)))))))))---------))))......)).)))......... ( -27.30)
>DroSec_CAF1 29290 116 + 1
AACUGUCGCAGAAUUCA-UAAUUGCCUGCACUUGUAAUUUUAAAUUGUCCAGAAAUGUUCGCAAGUCAGAGCAAGGCUUGUGAGAUUAAUAAUUCUCGAAGUGAGACAGUGCAGCUA
.((((((..........-...(((((((.(((((((((.....)))(..((....))..)))))))))).)))).((((.(((((........)))))))))..))))))....... ( -30.30)
>DroEre_CAF1 16490 117 + 1
AGCUGUCGCAGAAUUAAAUAUUUGCUUGCCUUUGUAAUUUUAAAUUGUUCAGAAAUGUUCACAAGUCAGAGCAAGGCGUGUGAGAUUACCAAUUCUCAAAAUGAAACAGUGCAGCUA
(((((.(((..............((.((((((((......))))((((((.((..((....))..)).)))))))))).))((((........))))...........)))))))). ( -27.50)
>DroYak_CAF1 16648 117 + 1
AGCUGUCGCAGAACUAAAAAGUUGCCUUCCUUUGUAAUUUUAAAUUGUUCAGAAAUGUUCACAAGUCAGAGCAAGGCUUGUGAGAUUACUAAUUCUCAAAGUGAGACAGUACAGCUA
((((((.((.((((...((((((((........)))))))).....))))((.(((.((((((((((.......))))))))))))).))...((((.....))))..)))))))). ( -32.50)
>consensus
AACUGUCGCAGAAUUAA_UAAUUGCCUGCACUUGUAAUUUUAAAUUGUUCAGAAAUGUUCACAAGUCAGAGCAAGGCUUGUGAGAUUACUAAUUCUCAAAGUGAGACAGUGCAGCUA
(((((.(((.((((.....((((((........)))))).......)))).......((((((((((.......)))))))))).........((((.....))))..)))))))). (-20.41 = -21.72 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:02 2006