Locus 9961

Sequence ID 3R_DroMel_CAF1
Location 26,683,943 – 26,684,059
Length 116
Max. P 0.518453
window15875

overview

Window 5

Location 26,683,943 – 26,684,059
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.08
Mean single sequence MFE -37.14
Consensus MFE -33.72
Energy contribution -33.60
Covariance contribution -0.12
Combinations/Pair 1.11
Mean z-score -1.11
Structure conservation index 0.91
SVM decision value -0.03
SVM RNA-class probability 0.518453
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26683943 116 - 27905053
GUUGGACAUUGCGUGACCCGG---UAGUAAUGGCUUCAUUCGGGGAUGCACCUGAUGACCGGCCACCUGCUUUCUUGCCCGGAAGUUGAAAAGUUUCGAACUUUUC-GAAACCAGGAAAA
(((((.(((((.(((.(((((---.(((....)))....)))))....))).))))).)))))..((((.((((.....(....)..(((((((.....)))))))-)))).)))).... ( -36.20)
>DroSec_CAF1 274673 116 - 1
GUUGGACAUUGCGUGACCCGG---UAGUAAUGGCUUCAUUCGGGGAUGCACCUGAUGACCGGCCACCUGCUUUCUUGACCGGAAGUUGAAAAGUUUCGAACUUUUC-GAAACCAGGAAAA
(((((.(((((.(((.(((((---.(((....)))....)))))....))).))))).)))))..((((.((((.....(....)..(((((((.....)))))))-)))).)))).... ( -36.20)
>DroSim_CAF1 271414 116 - 1
GUUGGACAUUGCGUGACCUGG---UAGUAAUGGCUUCAUUCGGGGAUGCACCUGAUGACCGGCCACCUGCUUUCUUGACCGGAAGUUGAAAAGUUUCGAACUUUUC-GAAACCAGGAAAA
................(((((---(.....(((((((((.((((......))))))))..)))))...((((((......))))))((((((((.....)))))))-)..)))))).... ( -35.60)
>DroEre_CAF1 290639 120 - 1
GUUGGACAUCGCGUGACCCCGUCGUAGUAAUGGCUUCAUUCGGGGAUGCACCUGAUGACCGGCCACCUGCUUUCUUGACCGGAAGUUGAAAAGUUCCGAACUUUUCCAAAACCAGGAAAA
(((((.(((((.(((.(((((....(((....))).....)))))...))).))))).)))))..(((((((((......)))))..(((((((.....)))))))......)))).... ( -38.70)
>DroYak_CAF1 279622 117 - 1
GUUGGACAUCGCGUGACCCCG---CAGUAAUGGCUUCAUUCGGGGAUGCACCUGAUGACCGGCCACCUGCUUUCUUGACCGGAAGUUGAAAAGUUUCGAACUUUUCCGAGGCCAGGAAAA
...((.(((((.(((.(((((---....((((....)))))))))...))).))))).))((((....((((((......)))))).(((((((.....)))))))...))))....... ( -39.00)
>consensus
GUUGGACAUUGCGUGACCCGG___UAGUAAUGGCUUCAUUCGGGGAUGCACCUGAUGACCGGCCACCUGCUUUCUUGACCGGAAGUUGAAAAGUUUCGAACUUUUC_GAAACCAGGAAAA
(((((.(((((.(((.(((((....(((....)))....)))))....))).))))).)))))..((((.((((.....(....)..(((((((.....))))))).)))).)))).... (-33.72 = -33.60 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:47 2006