| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,624,522 – 26,624,621 |
| Length | 99 |
| Max. P | 0.756283 |
| Location | 26,624,522 – 26,624,621 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 80.68 |
| Mean single sequence MFE | -30.85 |
| Consensus MFE | -17.66 |
| Energy contribution | -17.60 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.756283 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26624522 99 + 27905053 AAGAAUCCAGGGCGAUCGCGUGCACGCACACUUCAAAGCUCUGAAGAUCGUCUCGUGUGUGUGUGAUCUCGAUUCCGUUCUUUCUACACGGAAAAAAGA ...........(.(((((((..(((((((.(((((......)))))...))...)))))..))))))).)..((((((.........))))))...... ( -28.50) >DroSec_CAF1 216232 94 + 1 AAGAAUCCAGGGCGAUCGCGUGCACGCACACUUCGGAGCUCUGAAGAUCGUCUCGUGUG--UGUGCUCUCGAUUGCGCUCUUUCUACACGGAA---AGA .........(.(((((((.(.(((((((((((((((....)))))((.....)))))))--))))).).))))))).)(((((((....))))---))) ( -40.30) >DroSim_CAF1 211538 94 + 1 AAGAAUCCAGGGCGAUCGCGUGCACGCACACUUCGGAGCUCUGAAGAUCGUCUCGUGUG--UGUGCUCUCGAUUCCGCUCUUUCUACACGGAA---AGA .((((...((((((((((.(.(((((((((((((((....)))))((.....)))))))--))))).).))))..))))))))))........---... ( -35.90) >DroYak_CAF1 218757 75 + 1 AAGAAUCCAGGGCGAUCGCGUGUACGCACACUUCGCAGCUCUGAAGAUCGUCUC------------------------UCUUUCUACACAGAGAAAAAU ..........((((((((((....)))....((((......)))))))))))((------------------------(((........)))))..... ( -18.70) >consensus AAGAAUCCAGGGCGAUCGCGUGCACGCACACUUCGGAGCUCUGAAGAUCGUCUCGUGUG__UGUGCUCUCGAUUCCGCUCUUUCUACACGGAA___AGA .........(((((((((((....)))....(((((....)))))))))))))............................((((....))))...... (-17.66 = -17.60 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:23 2006