Locus 9941

Sequence ID 3R_DroMel_CAF1
Location 26,608,631 – 26,608,726
Length 95
Max. P 0.775611
window15845

overview

Window 5

Location 26,608,631 – 26,608,726
Length 95
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 75.99
Mean single sequence MFE -17.16
Consensus MFE -9.38
Energy contribution -10.18
Covariance contribution 0.81
Combinations/Pair 1.10
Mean z-score -1.79
Structure conservation index 0.55
SVM decision value 0.54
SVM RNA-class probability 0.775611
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26608631 95 + 27905053
UUUUUGAUGCGUUCAAUUUGUUGCCAAACAAA--UCAAAGCACAAA--------CAAAAACGCUCCCCGAAAAACCGA--AAAU-----UUGAUUAGCAUCAGCUGUUGAAA
...(((((((..((((((((((....))))))--....(((.....--------.......)))..............--....-----))))...)))))))......... ( -15.20)
>DroVir_CAF1 245440 81 + 1
CAUUUGAUGCGUUCAAUUUGUUGCCAAACAAA--UCAAAG-ACAAA--------CAAACGCAUUUC---------------GUU-----UUGAUUAGCAUCAGCUGCUGAAA
((.(((((((..((((((((((....))))))--).....-.....--------.(((((.....)---------------)))-----))))...))))))).))...... ( -16.70)
>DroGri_CAF1 388709 88 + 1
CAUUUGAUGCGUUCAAUUUGUUGCCAAACAAAAUGCAAAG-ACAAA--------CAAACGCAUUCA---------------GCUUUCUGUUGAUUAGCAUCAGCUGUUGAAA
.......((((((...((((((((..........)))...-)))))--------..))))))((((---------------((.....((((((....)))))).)))))). ( -19.10)
>DroEre_CAF1 206837 95 + 1
CAUUUGAUGUGUUCAAUUUGUUGCCAAACAAA--UCAAAGCACAAA--------CAAAAACGCUCCCCGAAAAAUCGA--AAAU-----UUGAUUAGCAUCAGCUGUUGAAA
..(((((((((((..(((((((....))))))--)...)))))...--------......((.....))....)))))--)..(-----(..((.(((....)))))..)). ( -16.40)
>DroMoj_CAF1 258641 81 + 1
CAUUUGAUGCGUUCAAUUUGUUGCCAAACAAA--UCAAAG-ACAAA--------CAAACGCAUUCG---------------GGU-----GUGAUUAGCAUCAGCUGCUGAAA
(((((((((((((...((((((..........--.....)-)))))--------..)))))).)))---------------)))-----)...((((((.....)))))).. ( -19.96)
>DroAna_CAF1 199492 99 + 1
CAUGUGAUGCGUUCAAUUUGUUGCCAAACAAA--UCAAAUCACAAAAGAACAAACAAA-AGGC---CC--AAAACCAAAAAAAA-----UUGAUUAGCAUCAGCUGUUGAAA
....((((((..((((((((((....)))...--........................-.((.---..--....)).....)))-----))))...)))))).......... ( -15.60)
>consensus
CAUUUGAUGCGUUCAAUUUGUUGCCAAACAAA__UCAAAG_ACAAA________CAAACACACUCC_______________AAU_____UUGAUUAGCAUCAGCUGUUGAAA
((.(((((((..((((((((((....))))))...................................((......))............))))...))))))).))...... ( -9.38 = -10.18 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:45:20 2006