Locus 994

Sequence ID 3R_DroMel_CAF1
Location 3,174,347 – 3,174,467
Length 120
Max. P 0.667405
window1610

overview

Window 0

Location 3,174,347 – 3,174,467
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 93.89
Mean single sequence MFE -32.30
Consensus MFE -25.83
Energy contribution -25.45
Covariance contribution -0.38
Combinations/Pair 1.11
Mean z-score -1.95
Structure conservation index 0.80
SVM decision value 0.28
SVM RNA-class probability 0.667405
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3174347 120 - 27905053
AGUAAGCGGCCAAACCGCAAGUUGAAGUAAUUUCUACUUAGCCCCAACUAACUACAGGCAGCAUGAGAGUGUUGGAAAAAACGCGGAGAGGAAACUUCGGAACGCCUCAGAAAUUAAAAU
.....(((.((...((((.((((((((((.....))))).....))))).........((((((....))))))........)))).(((....))).))..)))............... ( -29.60)
>DroSim_CAF1 5584 120 - 1
AGUGAGCGGCCAAACCGCAAGUUGAAGUAAUUUCUACUUAGCCACAACUAACUACGGGUAGCAUGGAAGUGUUGUAAAAAACGCGGAGAGGAAACUUCGGAACGCCUCAGAAAUUAAAAU
.....((((.....)))).........((((((((......(((...(((.(....).)))..)))..(((((......)))))...((((...(....)....)))))))))))).... ( -29.00)
>DroEre_CAF1 542 120 - 1
AGUGAGCGGCCAAGCCGCAAGUUGAAGUAAUUUCUACUUAGUCCCAACUAACUACGGGCAGCGUGGAAGUGUUGGAAAAAACGCGGAGAGGAAACUUCGGAACGCCUCAGAAAUUAAAAU
.....(((((...))))).........((((((((......(((.......(((((.....)))))..(((((......))))))))((((...(....)....)))))))))))).... ( -34.70)
>DroYak_CAF1 6112 120 - 1
AGCGAGCGGCCAAGCCGCAAGUUGAAGUAAUUUCUACUUAGCCCCAACUAAGUACAGCCAGCAUGGAAGUGUUGGAAAAAACACGGAGAGGAAACUUCGGAACGCCUCAGAAAUUAAAAU
(((..(((((...)))))..)))....((((((((((((((......))))))....(((((((....)))))))............((((...(....)....)))))))))))).... ( -35.90)
>consensus
AGUGAGCGGCCAAACCGCAAGUUGAAGUAAUUUCUACUUAGCCCCAACUAACUACAGGCAGCAUGGAAGUGUUGGAAAAAACGCGGAGAGGAAACUUCGGAACGCCUCAGAAAUUAAAAU
.....((((.....)))).........((((((((..((((......))))....((((.........(((((......)))))...(((....)))......)))).)))))))).... (-25.83 = -25.45 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:52 2006