Locus 993

Sequence ID 3R_DroMel_CAF1
Location 3,174,193 – 3,174,307
Length 114
Max. P 0.908697
window1609

overview

Window 9

Location 3,174,193 – 3,174,307
Length 114
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.58
Mean single sequence MFE -42.75
Consensus MFE -38.38
Energy contribution -38.38
Covariance contribution 0.00
Combinations/Pair 1.03
Mean z-score -2.32
Structure conservation index 0.90
SVM decision value 1.06
SVM RNA-class probability 0.908697
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3174193 114 + 27905053
GAAUGGAAAAAGUAAUGGAAACAAGAAGUGGUUGCAGCGGUGCGGUGUUGGCCCAAACGGAAGUUGGCGCUGAUGGCCGGGCUUUGG------CUUUGGCCAACUUCAAGAUGCUGCUCC
....(((...((((.((....)).((((((((((.((((((.((((((..((((((.(....))))).))..)).)))).)))...)------)).))))).)))))....))))..))) ( -42.90)
>DroSim_CAF1 5430 114 + 1
GAAUGGAAAAAGUAAUGGAAACAAGAAGUGGUUGCAGCGGUGCGGUGUUGGCCCAAACGGAAGUUGGCGCUGAUGGCCGGGCUUUGG------CUUUGGCCAACUUCAAGAUGCUGCUCC
....(((...((((.((....)).((((((((((.((((((.((((((..((((((.(....))))).))..)).)))).)))...)------)).))))).)))))....))))..))) ( -42.90)
>DroEre_CAF1 388 114 + 1
GAAUGGAAAAAGUAAUGGAAACAAGAAGUGGUUGCAGCGGUGCGGUGUUGGCCCAAACGGAAGUUGCUGCUGAUGGCCGGGCUUUGG------CUUUGGCCAACUUCAAGAUGCUGCUCC
....(((...((((.((....)).(((((....(((((((.((.......)))).(((....))))))))...(((((((((....)------).))))))))))))....))))..))) ( -41.50)
>DroYak_CAF1 5952 120 + 1
GAAUGGAAAAAGUAAUGGAAACAAGAAGUGGUUGCAGCGGUGCGGUGUUGGCCCAAACGGAAGUUGGCGCUGAUGGCCGGGCUUUGGCUUUGGCUUUGGCCAACUUCAAGAUGCUGCUCC
....(((........((....))..........((((((((.((((((..((((((.(....))))).))..)).)))).))(((((..(((((....)))))..))))).))))))))) ( -43.70)
>consensus
GAAUGGAAAAAGUAAUGGAAACAAGAAGUGGUUGCAGCGGUGCGGUGUUGGCCCAAACGGAAGUUGGCGCUGAUGGCCGGGCUUUGG______CUUUGGCCAACUUCAAGAUGCUGCUCC
....(((...((((.((....)).(((((((((((((((.((.(((....)))))(((....)))..))))).))))).((((..(((....)))..)))).)))))....))))..))) (-38.38 = -38.38 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:51 2006