Locus 992

Sequence ID 3R_DroMel_CAF1
Location 3,171,344 – 3,171,464
Length 120
Max. P 0.570240
window1608

overview

Window 8

Location 3,171,344 – 3,171,464
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 90.56
Mean single sequence MFE -32.94
Consensus MFE -26.20
Energy contribution -27.21
Covariance contribution 1.01
Combinations/Pair 1.11
Mean z-score -2.09
Structure conservation index 0.80
SVM decision value 0.07
SVM RNA-class probability 0.570240
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3171344 120 + 27905053
UGCAUCACCACUAUCCGCCAGGUGCUCCUGCAGCACCUGCUCCGGCAUCCCAGCCAGAUCCCAAAAAGAUGACUGUCAUCGAAACUGGCACACCCGAUGCCAACGGAUGCUACACGCAAA
(((........((((((.((((((((.....))))))))....((((((...(((((..........((((.....))))....)))))......))))))..))))))......))).. ( -38.88)
>DroSim_CAF1 2535 120 + 1
UGCAUCACCACUAUCCGCCAGGUGCUCCACUAGCCCCUGCUCCUCCAUCCCAGCCAGAUCCCAAAAAGAUGACUGUCAUCGAAACUGGCACACCCGAUGCUAACGGAUGCUACACGCAAA
.(((((..........((.(((.(((.....))).)))))............(((((..........((((.....))))....)))))......))))).......(((.....))).. ( -27.64)
>DroYak_CAF1 2745 120 + 1
UGCAUCACCACUAUCCGCCGGCUGCUCCUGUAGCCCCUGCUCCGGCAGCCCAGCCAGAUCCCAAAAAGAUGACUGUCGUCGAAACUGGCCAACCCGACGCCAAUGGGUGCUACACACAAA
.(((((.............(((((((...((((...))))...)))))))..((((((((.......)))(((....)))....)))))................))))).......... ( -32.30)
>consensus
UGCAUCACCACUAUCCGCCAGGUGCUCCUGUAGCCCCUGCUCCGGCAUCCCAGCCAGAUCCCAAAAAGAUGACUGUCAUCGAAACUGGCACACCCGAUGCCAACGGAUGCUACACGCAAA
.(((((..........((.(((.(((.....))).)))))...((((((...(((((..........((((.....))))....)))))......))))))....))))).......... (-26.20 = -27.21 +   1.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:50 2006