Locus 9918

Sequence ID 3R_DroMel_CAF1
Location 26,501,827 – 26,501,917
Length 90
Max. P 0.678653
window15813

overview

Window 3

Location 26,501,827 – 26,501,917
Length 90
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 85.37
Mean single sequence MFE -30.42
Consensus MFE -21.76
Energy contribution -21.18
Covariance contribution -0.58
Combinations/Pair 1.25
Mean z-score -2.91
Structure conservation index 0.72
SVM decision value 0.30
SVM RNA-class probability 0.678653
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26501827 90 - 27905053
---CCGAACCAAAAUCCGGAGUUCUGGGCCAAAGAGACGGAGGCGGAGACGAUGGCCGCAUGCCGAUAAUGUGCGGCCAUAAGGUAAUGAAAA
---....(((....((((...((((.......)))).))))..((....))((((((((((.........))))))))))..)))........ ( -31.90)
>DroPse_CAF1 133844 90 - 1
AGAUGGAGACAGAGAAUGGACUCGGAGGC---AGAGGCGGAGUCGGAGACGAUGGCCGCAUGCCGAUAAUGUGCGGCCAUAAGGUAAUGAAAA
..((((.(((((((......)))...(((---(...((((.((((....))))..)))).)))).....))).)..))))............. ( -31.10)
>DroSec_CAF1 93691 90 - 1
---CCGAACCAAAAUCCGGAGUCCUGGACCAAAGAGACGGAGGCGGAGGCGAUGGCCGCAUGCCGAUAAUGUGCGGCCAUAAGGUAAUGAAAA
---....(((....((((..(((((.......)).))).....))))....((((((((((.........))))))))))..)))........ ( -28.50)
>DroSim_CAF1 95339 90 - 1
---CCGAACCAAAAUCCGGAGUCCUGGGCCAAAGAGACGGAGGCGGAGGCGAUGGCCGCAUGCCGAUAAUGUGCGGCCAUAAGGUAAUGAAAA
---....(((....((((..(((((.......)).))).....))))....((((((((((.........))))))))))..)))........ ( -28.50)
>DroYak_CAF1 99827 90 - 1
---AUGAACCAAAGUCCGGAGUCCUGGACCAAAGAGACGGAGGCGGAGACGAUGGCCGCAUGCCGAUAAUGUGCGGCCAUAAGGUAAUGAAAA
---....(((...((((((....))))))..............((....))((((((((((.........))))))))))..)))........ ( -32.10)
>DroPer_CAF1 131306 90 - 1
AGAUGGAGACAGAGAAUGGACUCGGAGGC---GGAGGCGGAGUCGGAGACGAUGGCCGCAUGCCGAUAAUGUGCGGCCAUAAGGUAAUGAAAA
..((((.(((((((......)))...(((---(...((((.((((....))))..)))).)))).....))).)..))))............. ( -30.40)
>consensus
___CCGAACCAAAAUCCGGAGUCCUGGGCCAAAGAGACGGAGGCGGAGACGAUGGCCGCAUGCCGAUAAUGUGCGGCCAUAAGGUAAUGAAAA
.......(((.....((...(((............)))...))((....))((((((((((.........))))))))))..)))........ (-21.76 = -21.18 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:51 2006