| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,482,389 – 26,482,481 |
| Length | 92 |
| Max. P | 0.760209 |
| Location | 26,482,389 – 26,482,481 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 74.98 |
| Mean single sequence MFE | -29.49 |
| Consensus MFE | -15.33 |
| Energy contribution | -15.30 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.760209 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26482389 92 - 27905053 GAUUGGCC------CUCAAGUUC------CGAAU-------GGCGGCGAAUGGGGGGAGUGGAAAGUUUUUCUGGUCUUCUGGCCAGGAAUUCCAUUAAAAAGUUUACGUU ......((------((((..(.(------((...-------..))).)..)))))).(((((((....(((((((((....)))))))))))))))).............. ( -30.90) >DroSim_CAF1 74686 90 - 1 GAUUGGCC------CUCCAGCUC------CGAAU-------GCCGGCGAAUGG--GGAGUGGAAAGUUUUUCUGGUCUUCUGGCCAGGAAUUCCAUUAAAAAGUUUACGUU ........------(((((...(------((...-------..)))....)))--))(((((((....(((((((((....)))))))))))))))).............. ( -28.00) >DroEre_CAF1 82350 91 - 1 GAUUGGCC------CUCCAGUGC------CGCAU-------GUCGGCGAAUGGG-GGAGUGGAAAGUUUUUCUGGUCUUCUGGCCAGGAAUUCCAUUAAAAAGUUUACGUU .......(------(((((.(((------((...-------..)))))..))))-))(((((((....(((((((((....)))))))))))))))).............. ( -34.20) >DroYak_CAF1 78877 97 - 1 GAUUGGCC------CUCCAGUUCCAGUUUCGACU-------GGCGGCCAGUGGG-GAGGUGGAAAGUUUUUCUGGUCUUCUGGCCAGGAAUUCCAUUAAAAAGUUUACGUU .(((((((------..((((((........))))-------)).)))))))...-..(((((((....(((((((((....)))))))))))))))).............. ( -36.10) >DroAna_CAF1 74269 87 - 1 AAUUGGCU------UUAAGG---------GGAAC-------GGACAAGAAAGA--AGGGGGGAAAGUUUUUCUGCUCCUCUGGCCAGGAAUUCCAUUAAAAAGUUUACAUU ...(((((------...(((---------(((.(-------(((.((((....--...........)))))))).)))))))))))((....))................. ( -18.36) >DroPer_CAF1 108872 100 - 1 GAUUGGAUGGAGGCUUGGUG---------GGAACUUGGUGGGGGCCCGGGAGC--UUGGGGGAAAGUUUUUCUGGUUUUCUGGCCAGGAAUUCUAUUAAAAAGUUUGCGCU ....((.((.((((((.(((---------(((.((((((.((((.((((((((--((......))))..))))))..)))).))))))..))))))....)))))).)))) ( -29.40) >consensus GAUUGGCC______CUCCAGUUC______CGAAU_______GGCGGCGAAUGG__GGAGUGGAAAGUUUUUCUGGUCUUCUGGCCAGGAAUUCCAUUAAAAAGUUUACGUU .........................................................(((((((....(((((((((....)))))))))))))))).............. (-15.33 = -15.30 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:44:46 2006