Locus 990

Sequence ID 3R_DroMel_CAF1
Location 3,169,042 – 3,169,162
Length 120
Max. P 0.571661
window1604

overview

Window 4

Location 3,169,042 – 3,169,162
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.11
Mean single sequence MFE -35.31
Consensus MFE -32.64
Energy contribution -32.97
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.67
Structure conservation index 0.92
SVM decision value 0.08
SVM RNA-class probability 0.571661
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3169042 120 - 27905053
CCGGCUCAUCCUCCGAAUCCUCUCGGCUCUGGCCUGCUUUGUUUCAUGUUGUGGUGGCUUGCUUUUAGUUGCCUCUAUUAUCCUUAAUGCGAGUCACUUUGUUAGAAACGUCAGUGGGCC
............((((......))))....((((..((.((((((.((....((((((((((....((..............))....))))))))))....))))))))..))..)))) ( -35.04)
>DroSec_CAF1 17155 120 - 1
CCGUCUCAUCCUCCGAAUCCUCUCGGCUGUGGCCUGCUUUGUUUCAUGUUGUGGUGGCUUGCUUUUAGUUGCCUCUAUUAUCCUUAAUGCGAGUCACUUUGUUAGAAACGUCAGUGGGCC
............((((......))))....((((..((.((((((.((....((((((((((....((..............))....))))))))))....))))))))..))..)))) ( -35.04)
>DroEre_CAF1 8778 119 - 1
CAGGCUCAUCCUCCGAUUCCGCUCGGAUCUGG-CUGCUUUGUUUCAUGUUGUGGUGGCUUGCUUUUAGUUGCCUCUAUUAUCCUUAAUGCGAGUCACUUUGUUAGAAACGUCAGUGGGCC
..(((((....(((((......)))))....(-(((...((((((.((....((((((((((....((..............))....))))))))))....)))))))).))))))))) ( -35.84)
>consensus
CCGGCUCAUCCUCCGAAUCCUCUCGGCUCUGGCCUGCUUUGUUUCAUGUUGUGGUGGCUUGCUUUUAGUUGCCUCUAUUAUCCUUAAUGCGAGUCACUUUGUUAGAAACGUCAGUGGGCC
............((((......))))....((((..((.((((((.((....((((((((((....((..............))....))))))))))....))))))))..))..)))) (-32.64 = -32.97 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:46 2006