Locus 99

Sequence ID 3R_DroMel_CAF1
Location 607,612 – 607,704
Length 92
Max. P 0.866796
window167 window168

overview

Window 7

Location 607,612 – 607,704
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 85.72
Mean single sequence MFE -29.83
Consensus MFE -24.58
Energy contribution -25.22
Covariance contribution 0.64
Combinations/Pair 1.23
Mean z-score -2.42
Structure conservation index 0.82
SVM decision value 0.85
SVM RNA-class probability 0.866796
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 607612 92 + 27905053
GAACCUUCAGUUUUUCCAGCUCGCGGCAGUAGGCCGCCUCAAGUUCCUUCAGCUCCAGUUCGGCCCGCUCGCGAUCUAGAAAUUAGAAGUAU
....((((....((((.((.(((((..((..(((((.((..((((.....))))..))..)))))..))))))).)).))))...))))... ( -28.70)
>DroSec_CAF1 23644 92 + 1
GAAUCUUCAGUUUUUCCAGCUCGCGGCAGUAGGCCGCCUCAAGUUCCUUCAGCUCCAGUUCGGCCCGCUCGCGAUCUGGAAUUUAAAGGUAU
..(((((.((...((((((.(((((..((..(((((.((..((((.....))))..))..)))))..))))))).)))))).)).))))).. ( -33.30)
>DroSim_CAF1 22806 92 + 1
GAAUCUUCAGUUUUUCCAGCUCGCGGCAGUAGGCCGCCUCAAGUUCCUUCAGCUCCAGUUCGGCCCGCUCGCGAUCUGGAAUUUAAAGGUAU
..(((((.((...((((((.(((((..((..(((((.((..((((.....))))..))..)))))..))))))).)))))).)).))))).. ( -33.30)
>DroEre_CAF1 26408 92 + 1
GAACCUUCAAUUUUUCCAGCUCGCGACAGUAGGCCGCCUCAAGCUCCUUUAGCUCCAACUCGGCCCGCUCGCGAUCUGAAAUUCAGAAGAAG
....((((....((((.((.((((((..(..(((((.....((((.....))))......)))))..))))))).))))))....))))... ( -30.20)
>DroYak_CAF1 30454 92 + 1
GAACCUUUAGUUUUUCAAGCUCGCGGCAGUAGGCCGCCUCAAGCUCCUUCAGCUCCAACUCGGCCCGCUCGCGAUCUAGAAUUUAAAAGAAU
....((((.....(((.((.(((((..((..(((((.....((((.....))))......)))))..))))))).)).)))....))))... ( -26.90)
>DroAna_CAF1 26734 92 + 1
ACACCUUCAGCUUCUCUAGGUCGCGGCAAUAGGAGGCCUCUAGCUCCUUCAGCUCAAUCUCAGCUCGCUCGCGAUCUGCAAAUAAGGGGAAU
...........((((((((((((((((...(((((........)))))..((((.......)))).)).))))))))........)))))). ( -26.60)
>consensus
GAACCUUCAGUUUUUCCAGCUCGCGGCAGUAGGCCGCCUCAAGCUCCUUCAGCUCCAGCUCGGCCCGCUCGCGAUCUGGAAUUUAAAAGAAU
....((((.....((((((.(((((..((..(((((.....((((.....))))......)))))..))))))).))))))....))))... (-24.58 = -25.22 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 607,612 – 607,704
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 85.72
Mean single sequence MFE -33.82
Consensus MFE -25.42
Energy contribution -26.12
Covariance contribution 0.70
Combinations/Pair 1.21
Mean z-score -2.43
Structure conservation index 0.75
SVM decision value 0.20
SVM RNA-class probability 0.628817
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 607612 92 - 27905053
AUACUUCUAAUUUCUAGAUCGCGAGCGGGCCGAACUGGAGCUGAAGGAACUUGAGGCGGCCUACUGCCGCGAGCUGGAAAAACUGAAGGUUC
...((((...(((((((.(((((.((((((((..((.(((.........))).)).))))))...))))))).)))))))....)))).... ( -36.00)
>DroSec_CAF1 23644 92 - 1
AUACCUUUAAAUUCCAGAUCGCGAGCGGGCCGAACUGGAGCUGAAGGAACUUGAGGCGGCCUACUGCCGCGAGCUGGAAAAACUGAAGAUUC
....(((((..((((((.(((((.((((((((..((.(((.........))).)).))))))...))))))).))))))....))))).... ( -35.20)
>DroSim_CAF1 22806 92 - 1
AUACCUUUAAAUUCCAGAUCGCGAGCGGGCCGAACUGGAGCUGAAGGAACUUGAGGCGGCCUACUGCCGCGAGCUGGAAAAACUGAAGAUUC
....(((((..((((((.(((((.((((((((..((.(((.........))).)).))))))...))))))).))))))....))))).... ( -35.20)
>DroEre_CAF1 26408 92 - 1
CUUCUUCUGAAUUUCAGAUCGCGAGCGGGCCGAGUUGGAGCUAAAGGAGCUUGAGGCGGCCUACUGUCGCGAGCUGGAAAAAUUGAAGGUUC
..(((((....((((((.(((((((..(((((..((.(((((.....))))).)).)))))..)..)))))).)))))).....)))))... ( -38.10)
>DroYak_CAF1 30454 92 - 1
AUUCUUUUAAAUUCUAGAUCGCGAGCGGGCCGAGUUGGAGCUGAAGGAGCUUGAGGCGGCCUACUGCCGCGAGCUUGAAAAACUAAAGGUUC
...((((((..(((.((.(((((.((((((((..((.(((((.....))))).)).))))))...))))))).)).)))....))))))... ( -33.00)
>DroAna_CAF1 26734 92 - 1
AUUCCCCUUAUUUGCAGAUCGCGAGCGAGCUGAGAUUGAGCUGAAGGAGCUAGAGGCCUCCUAUUGCCGCGACCUAGAGAAGCUGAAGGUGU
.....((((.(((..((.(((((.(((((((.......)))...((((((.....).))))).))))))))).))...)))....))))... ( -25.40)
>consensus
AUACCUCUAAAUUCCAGAUCGCGAGCGGGCCGAACUGGAGCUGAAGGAACUUGAGGCGGCCUACUGCCGCGAGCUGGAAAAACUGAAGGUUC
...........((((((.(((((.((((((((..((.(((.........))).)).))))))...))))))).))))))............. (-25.42 = -26.12 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:04 2006