| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,303,056 – 26,303,158 |
| Length | 102 |
| Max. P | 0.562299 |
| Location | 26,303,056 – 26,303,158 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 81.48 |
| Mean single sequence MFE | -32.20 |
| Consensus MFE | -24.43 |
| Energy contribution | -23.77 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.562299 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26303056 102 - 27905053 UAUCAAGAAGGUCUUGCUGCCGAAGUCGCUACUAAAAGCAUGCUUAAUCUGGGUUUGAUUGGCA------UUGGUAUUGUUGUUAAUAUUCCU------GGGCUUGGGCGGCAA ..............(((((((.((((((((......)))(((((.((((.......))))))))------).(((((((....)))))))...------.))))).))))))). ( -31.30) >DroSec_CAF1 29811 102 - 1 UAUCAAGAAGGUCUUGCUGCCGAAGUCGCUACUAAAAGCGUGCUUAAUCUGGGUUUGAUUGGGA------UUGGUGUUGUUGUUAAUAUUCCU------GGGCUUGGGCGGCAG ...((((.....))))((((((((((((((......)))).))))..((..(((....(..(((------...((((((....))))))))).------.))))..)))))))) ( -30.60) >DroSim_CAF1 30756 102 - 1 UAUCAAGAAGGUCUUGCUGCCGAAGUCGCUACUAAAAGCGUGCUUAAUCUGGGUUUGAUUGGGA------UUGGUGUUGUUGUUAAUAUUCCU------GGGCUUGGGCGGCAG ...((((.....))))((((((((((((((......)))).))))..((..(((....(..(((------...((((((....))))))))).------.))))..)))))))) ( -30.60) >DroEre_CAF1 31988 102 - 1 UAUCAAGAAGGUCUUGCUGCCAAAGUCGCUGCUGAAGGCGUGCUUGAUCUGGCUUGGAUUGGGA------UUGGCGUUGUUGCUGAUGCUCCU------GGGCUUGGGCGGCAG ..............(((((((.((((((((......)))).))))...(.((((..(...((.(------(..(((....)))..)).)).).------.)))).)))))))). ( -36.30) >DroYak_CAF1 31040 108 - 1 GAUCAGGAAGGUCUUGCUGCCAAAGUCGCUGCUAAAAGCGUGCUUAAUCUGAUUUGGAUUGGGAUUGAGAUUGGUGUUGUUGUUGAUAUUCCU------GGGCCUGGACGGCAA ..(((((((.(((..((.(((((...((((......))))..((((((((.(.......).)))))))).)))))...))....))).)))))------))(((.....))).. ( -33.90) >DroAna_CAF1 30925 105 - 1 AAUCAGGAAGGUUUUGCUGCCGAAGUCGCUGCUGAAAGCGUGUUUGAUU---GAUUGAUUGGGG----GCUUGG--CUAUUGUUGUUGUUCCGGGCGAUAGGUUUCGGGGGCAG ..............((((.(((((..((((......)))..........---.((((.((.(((----((.(((--(....))))..))))).)))))).)..))))).)))). ( -30.50) >consensus UAUCAAGAAGGUCUUGCUGCCGAAGUCGCUACUAAAAGCGUGCUUAAUCUGGGUUUGAUUGGGA______UUGGUGUUGUUGUUAAUAUUCCU______GGGCUUGGGCGGCAG .............((((((((.((((((((......)))...(((((((.......))))))).........(((((((....)))))))..........))))).)))))))) (-24.43 = -23.77 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:45 2006