Locus 986

Sequence ID 3R_DroMel_CAF1
Location 3,166,621 – 3,166,741
Length 120
Max. P 0.809454
window1594

overview

Window 4

Location 3,166,621 – 3,166,741
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.22
Mean single sequence MFE -26.27
Consensus MFE -22.95
Energy contribution -23.07
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.44
Structure conservation index 0.87
SVM decision value 0.64
SVM RNA-class probability 0.809454
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3166621 120 - 27905053
AAAUUUAUUGCGAAUAACUCUUUCCUCUCAUAACUUUUGUCAGGGCACACUUUAUGCUUCCCAGUUGGGUUGAUUUUUUAGCUAAGCAAACUAAUCAACGCCCACAAUUUGCAAUCCGGA
......(((((((((.................((....))..((((..............((....))(((((((..((.((...)).))..)))))))))))...)))))))))..... ( -24.00)
>DroSec_CAF1 14702 120 - 1
AAAUUUAUUGCGAAUAACUCUUUCCUCUCAUAACUUUUGUCAGGGCACACUUUAUGCUUCCCAGUUGGGUUGAUUUUUUAGCUAAGCAAACUAAUCAACGCCCACAAUUUGCAAUCCGGA
......(((((((((.................((....))..((((..............((....))(((((((..((.((...)).))..)))))))))))...)))))))))..... ( -24.00)
>DroEre_CAF1 6344 120 - 1
AAAUUUAUUGCAAAUAACUCUUUCCCCUCAUAACUUUUGUCAGGGCACACUUUAUGCUUCCCAGUUGGGCUGAUUUUUUAGCCCAGCAAACUAAUCAACGCCCACAAUUUGCAAUCCGGA
......(((((((((.................((....))..((((........((.....))((((((((((....))))))))))............))))...)))))))))..... ( -30.80)
>consensus
AAAUUUAUUGCGAAUAACUCUUUCCUCUCAUAACUUUUGUCAGGGCACACUUUAUGCUUCCCAGUUGGGUUGAUUUUUUAGCUAAGCAAACUAAUCAACGCCCACAAUUUGCAAUCCGGA
......(((((((((.................((....))..((((..............((....))(((((((..((.((...)).))..)))))))))))...)))))))))..... (-22.95 = -23.07 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:37 2006