Locus 9859

Sequence ID 3R_DroMel_CAF1
Location 26,274,749 – 26,274,856
Length 107
Max. P 0.677963
window15737

overview

Window 7

Location 26,274,749 – 26,274,856
Length 107
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 78.33
Mean single sequence MFE -31.85
Consensus MFE -21.88
Energy contribution -21.97
Covariance contribution 0.09
Combinations/Pair 1.23
Mean z-score -1.27
Structure conservation index 0.69
SVM decision value 0.30
SVM RNA-class probability 0.677963
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26274749 107 - 27905053
GUUCGAGGGUCUGCUCUGCACUCCAGAUGCCCUCUACAGGACCGCUUUCCAGCUGUUCGACCGCAAGGGCAACGGCACUGUUUCCUAUGGUGAGAAAAUACUAAU----UU
.(((((((((....((((.....)))).))))))(((.(((......))).((((((...((....))..)))))).............))).))).........----.. ( -29.20)
>DroVir_CAF1 1568 105 - 1
AUUCGAGGGCUUGCUCUGCGCCCCCGAUGCCCUCUACAGAACUGCCUUCCAGCUGUUUGACCGCCAGGGCAAUGGCUCAGUUUCAUAUGGUUAAUAU----UAUC--AUAU
..(((.((((.........)))).)))((((((.....((((.((......)).)))).......)))))).............(((((((......----.)))--)))) ( -26.80)
>DroEre_CAF1 2002 109 - 1
CUUCGAGGGUCUGCUCUGCACCCCAGACGCCCUCUACAGGACCGCUUUCCAGCUGUUCGACCGCAAGGGCAACGGCACUGUAUCCUACGGUGAGAAAAUCCCAUC--CUAU
....((((((....((((.....)))).))))))...((((....(((((.((((((...((....))..))))))((((((...))))))).))))......))--)).. ( -32.70)
>DroWil_CAF1 1594 107 - 1
CUUUGAGGGUUUACUCUGCACACCAGAUGCCCUAUAUAGAACAGCAUUUCAGCUGUUCGAUCGUCAGGGCAAUGGCACUGUGUCAUAUGGUAAGUAAUCUCAAUA----AA
..((((((.((((((.(((((((((..((((((.....(((((((......))))))).......)))))).)))...)))).))...))))))...))))))..----.. ( -36.70)
>DroYak_CAF1 2038 107 - 1
CUUCGAGGGUCUGCUCUGCACCCCAGAUGCCCUCUACAGGACCGCUUUCCAGCUGUUCGACCGCAAGGGCAACGGCACUGUUUCCUACGGUAAGUAAAUCCUGUG----AA
....((((((....((((.....)))).))))))(((((((..((((....((((((...((....))..))))))(((((.....)))))))))...)))))))----.. ( -39.10)
>DroAna_CAF1 1841 110 - 1
CUUCGAGGGUCUACUGUGCACCCCCGAUGCCCUCUACAGGACCGCCUUCCAGCUGUUUGACCGUCAGGGAAAUGGCACCGUCUCCUAUGGUUAGUUAUU-UGAAAACAUAA
....((((((...(((((((.......))).....))))....))))))(((.((.((((((((..((((.(((....))).)))))))))))).)).)-))......... ( -26.60)
>consensus
CUUCGAGGGUCUGCUCUGCACCCCAGAUGCCCUCUACAGGACCGCUUUCCAGCUGUUCGACCGCAAGGGCAACGGCACUGUUUCCUAUGGUAAGUAAAU_CUAUA____AA
....((((((....((((.....)))).))))))....(((......))).((((((...((....))..))))))(((((.....))))).................... (-21.88 = -21.97 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:42 2006