Locus 9842

Sequence ID 3R_DroMel_CAF1
Location 26,189,787 – 26,189,889
Length 102
Max. P 0.838550
window15713

overview

Window 3

Location 26,189,787 – 26,189,889
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 92.63
Mean single sequence MFE -25.80
Consensus MFE -24.96
Energy contribution -25.20
Covariance contribution 0.24
Combinations/Pair 1.07
Mean z-score -1.21
Structure conservation index 0.97
SVM decision value 0.74
SVM RNA-class probability 0.838550
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26189787 102 - 27905053
AAAAUCGUAUUCCUUCCGAAGGUCAACACACACAGGGAUACAAAUACAUUUUCAAUGUUCACAGGGUAUGAGCAAAUUGGGGAUGUCACAGUUUUGGCUGUC
......((((((((.......(....)......))))))))....(((((..(((((((((.......))))))..)))..))))).(((((....))))). ( -25.12)
>DroSec_CAF1 171672 102 - 1
AAAAUCGUAUUCCUUUCGAAGGGCAACUCACAGAGGGAUACAAAUACAUUUUCAAUGUUCACAGGGUAUGAGCAAAUUGGGGAUGUCACAGUUUUGGCUGUC
......((((((((((.(..((....))..)))))))))))....(((((..(((((((((.......))))))..)))..))))).(((((....))))). ( -31.60)
>DroSim_CAF1 177635 102 - 1
AAAAUCGUAUUCCUUCCGAAGGGCAACUCACACAGGGAUACAAAUACAUUUUCAAUGUUCACAGGGUAUGAGCAAAUUGGGGAUGUCACAGUUUUGGCUGUC
......((((((((......((....)).....))))))))....(((((..(((((((((.......))))))..)))..))))).(((((....))))). ( -28.60)
>DroEre_CAF1 181515 99 - 1
AAAAUCGUAAUCCUUUCGAAGGACAACUCAC--AGGGUUACAAAUACAUUUUCAAUGUUCACAGGGCAUGAGCAAAUUGGGGAGGUCACAGUU-UGGCUGUC
......((((((((...((.(.....)))..--)))))))).......((..(((((((((.......))))))..)))..))(((((.....-)))))... ( -21.00)
>DroYak_CAF1 182330 99 - 1
AAAAUCGCAAUCCUUUCGAAGGACAACUCAC--AGGGAUGCAAAUACAUUUUCAAUGUUCACAGGGGUUGAGCAAAUGGGGGAUGUCACAGUU-UGGCUGUC
......(((.(((((((....))........--))))))))....(((((..(..((((((.......))))))....)..))))).((((..-...)))). ( -22.70)
>consensus
AAAAUCGUAUUCCUUUCGAAGGACAACUCACA_AGGGAUACAAAUACAUUUUCAAUGUUCACAGGGUAUGAGCAAAUUGGGGAUGUCACAGUUUUGGCUGUC
......((((((((.....((.....)).....))))))))....(((((..(((((((((.......))))))..)))..))))).(((((....))))). (-24.96 = -25.20 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:21 2006