Locus 9841

Sequence ID 3R_DroMel_CAF1
Location 26,186,332 – 26,186,428
Length 96
Max. P 0.505354
window15712

overview

Window 2

Location 26,186,332 – 26,186,428
Length 96
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.62
Mean single sequence MFE -42.97
Consensus MFE -31.65
Energy contribution -31.38
Covariance contribution -0.27
Combinations/Pair 1.25
Mean z-score -1.82
Structure conservation index 0.74
SVM decision value -0.06
SVM RNA-class probability 0.505354
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 26186332 96 - 27905053
GCGGUGCCGAGUAAUCGAUGGCGGCAUUGUAGAGCGGCUGCUUCGGUGGCUG----CUUGCUGGCG------A--UGGUGUUGCUGCUGCAGCC------------GGAGGCCGUUGGAG
(((((((((.((.....))..)))))))))..(((((((((....))(((((----(..((.((((------(--(...)))))))).))))))------------...))))))).... ( -44.50)
>DroSec_CAF1 168340 96 - 1
GCGGUGCCGAGUAAUCGAUGGCGGCAUUGUAGAGCGGCUGCUUCGGUGGCUG----CUUGCUGGCG------A--UGGUGUUGCUGCUGCAGCC------------GGAGGCCGUUGGAG
(((((((((.((.....))..)))))))))..(((((((((....))(((((----(..((.((((------(--(...)))))))).))))))------------...))))))).... ( -44.50)
>DroSim_CAF1 174230 96 - 1
GCGGUGCCGAGUAAUCGAUGGCGGCAUUGUAAAGCGGCUGCUUCGGUGGCUG----CUUGCUGGCG------A--UGGUGUUGCUGCUGCAGCC------------GGAGGCCGUUGGAG
(((((((((.((.....))..)))))))))..(((((((((....))(((((----(..((.((((------(--(...)))))))).))))))------------...))))))).... ( -44.40)
>DroEre_CAF1 178111 96 - 1
GCGGCGCCGAGUAAUCGAUGGCGGCAUUGAAGAGCGGCUGCUUUGGUGGCUG----CUUGCCGGCG------A--UGGUGUUGCUGCUGCAGCC------------GGAGGCCGUUGGAG
(((((.(((....((((.((.(((((......((((((..(....)..))))----))))))).))------.--))))(((((....))))))------------))..)))))..... ( -44.10)
>DroYak_CAF1 178875 102 - 1
GCGGUGCCGAAUAAUCGAUGGCGGCAUUGUAGAGCGGCUGCUUUGGUGGCUG----CUUGCUGGCGAUGGCGA--UGGUGUUGCUGCUGCAGCC------------GGAGGCCGUUGGAG
(((((((((.((.....))..))))))))).(((((((..(....)..))))----))).....(((((((..--(.(.(((((....))))))------------.)..)))))))... ( -44.30)
>DroAna_CAF1 178600 114 - 1
AGGGUGCCGAAUAAUCGAUGGCGGCAUUGUACAGAGCUUGCUUCGGUUGCUUGGAAAUCGCUGACG------AGCUGCCGUUGCUGUUGCAACUAUUGGAACCAUUUGAGGCCGUUGGAG
..(((.((((.........((((((.((((.((((((..((....)).)))..(....).))))))------)))))))(((((....)))))..)))).)))................. ( -36.00)
>consensus
GCGGUGCCGAGUAAUCGAUGGCGGCAUUGUAGAGCGGCUGCUUCGGUGGCUG____CUUGCUGGCG______A__UGGUGUUGCUGCUGCAGCC____________GGAGGCCGUUGGAG
(((((((((.........((.(((((........(((((((....)))))))......))))).)).........))))(((((....))))).................)))))..... (-31.65 = -31.38 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:43:20 2006