Locus 983

Sequence ID 3R_DroMel_CAF1
Location 3,164,355 – 3,164,475
Length 120
Max. P 0.760496
window1587

overview

Window 7

Location 3,164,355 – 3,164,475
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.00
Mean single sequence MFE -44.10
Consensus MFE -40.58
Energy contribution -40.70
Covariance contribution 0.12
Combinations/Pair 1.08
Mean z-score -1.22
Structure conservation index 0.92
SVM decision value 0.50
SVM RNA-class probability 0.760496
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3164355 120 - 27905053
AAGGUGCAUGGCUUGAUUAUAGUGCUGGCUGGCCAGUAGGAGUAGCAAGAGUCCGAGCCAUCACCACGUCGGUGCCAUAUUAGUCACAGCGGCGGAACGGCCACCGAUGUCUAGGUGGGC
..((((.(((((((........((((((....))))))(((.(......).))))))))))))))(((((((((((......(((.....))).....)).))))))))).......... ( -46.90)
>DroSec_CAF1 12397 120 - 1
AAAGUGCAUGGCUUGAUUAUAGUGCUGGCUGGCCAGUAGGAGUAGCAAGAGUCCAAGCCAUCACCACGUCGGUGCCAUAUUAGUCACAGCGGCGGAACGGCCACCGAUGUCUAGGUGGGC
.....((.((((((........((((((....))))))(((.(......).)))))))))((((((((((((((((......(((.....))).....)).)))))))))...))))))) ( -44.30)
>DroSim_CAF1 14641 120 - 1
AAAGUGCAUGGCUUGAUUAUAGUGCUGGCUGGCCAGUAGGAGUAGCAAGAGUCCAAGCCAUCACCACGUCGGUGCCAUAUUAGUCACAGCGGCGGAACGGCCACCGAUGUCUAGGUGGGC
.....((.((((((........((((((....))))))(((.(......).)))))))))((((((((((((((((......(((.....))).....)).)))))))))...))))))) ( -44.30)
>DroEre_CAF1 4099 120 - 1
AAAGUGCACGGCUUGAUUAUAGUGCUGGCUGGCCAGUAGGAGUACUGUGAGUCCAAGGCAUCGCCGCGUCGGUGCCAUAUUAGUCACAACGGCGGAACGGCCACCGAUGUCUAGGUGGGC
.....((..(.((((.((((((((((.(((....)))...))))))))))...)))).).((((((((((((((((......(((.....))).....)).)))))))))...))))))) ( -43.30)
>DroYak_CAF1 13670 120 - 1
AAAGCGCUCGGCUUGAUUAUAGUGCUGGUUGGCCAGUAGGAGUACCAUGAGUCCAAGCCAUAACCACGUCGGUGCCAUAUUAGUCACAACGGCGGAACAGCCACCGAUGUCUAGGUGGGC
.....((((((((((.((((..((((((....))))))((....))))))...))))))...(((((((((((.........((....))(((......)))))))))))...))))))) ( -41.70)
>consensus
AAAGUGCAUGGCUUGAUUAUAGUGCUGGCUGGCCAGUAGGAGUAGCAAGAGUCCAAGCCAUCACCACGUCGGUGCCAUAUUAGUCACAGCGGCGGAACGGCCACCGAUGUCUAGGUGGGC
.....((..(((((........((((((....))))))(((.(......).)))))))).((((((((((((((((......(((.....))).....)).)))))))))...))))))) (-40.58 = -40.70 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:29 2006