| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 26,100,823 – 26,100,925 |
| Length | 102 |
| Max. P | 0.782163 |
| Location | 26,100,823 – 26,100,925 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.31 |
| Mean single sequence MFE | -29.61 |
| Consensus MFE | -19.21 |
| Energy contribution | -19.27 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.782163 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 26100823 102 + 27905053 UCGGGUUGCCAUGCCA--------------GU---UG-AAUUUCAAACCCUAUUUUGGGUUUCAAAGUUGCUUCCGAUUGGAUAAACGCGGUAGUAUGAGUAAUUACAAAUAAUGCUGCU .((.(((......(((--------------((---((-(((((.((((((......))))))..))))).....)))))))...))).))(((((((...............))))))). ( -24.96) >DroPse_CAF1 97296 116 + 1 UUGGGUUGCCAUAGCACCAGCGCGGCGCAUGU---AA-AAUUUCAAACCCUAUUUUGGGUUUCAAAGUUGCUUCCGAUUGGAUAAAUGCGGGAGUAUGAGUAAUUACAAAUAAUGCUUUU .......(((...((....))..)))((((((---((-...(((((((((......))))).......(((((((((((.....))).))))))))))))...))))).....))).... ( -30.40) >DroGri_CAF1 119302 103 + 1 --UGGUUGUCAUGCCA--------------GCAUGAA-AAUUUCAAACCCUAUUUUGGGUUUGAAAGUUGCUUCCGAUUGGAUAAAUGUGGGAGUAUGGGUAAUUACAAAUAAUACCGUU --......(((((...--------------.))))).-..((((((((((......))))))))))..(((((((((((.....))).))))))))..((((.(((....)))))))... ( -30.30) >DroWil_CAF1 126409 99 + 1 ----GUUGCCAUGCCA--------------GCAUGAA-AAUUUCAAACCCUAUUUUGGGUUUGAAAGUUGCUUCCGAUUGGAUAAAUGUGGGAGUAUGGGUAAUUACAAAUAAUGCUU-- ----(((((((((...--------------.)))...-..((((((((((......))))))))))..(((((((((((.....))).))))))))..))))))..............-- ( -28.70) >DroMoj_CAF1 130922 104 + 1 --UGGUUGUCAUGCCA--------------GCAUGAAAAAUUUCAAACCCUAUUUUGGGUUUCAAAGCCGCUUCCGAUUGGAUAAAUGCGGGAGUAUGGGUAAUUACAAAUAAUACCCAG --.((((.(((((...--------------.)))))........((((((......))))))...))))((((((((((.....))).))))))).((((((.(((....))))))))). ( -32.90) >DroPer_CAF1 100073 116 + 1 UUGGGUUGCCAUAGCACCAGCGCGGCGCAUGU---AA-AAUUUCAAACCCUAUUUUGGGUUUCAAAGUUGCUUCCGAUUGGAUAAAUGCGGGAGUAUGAGUAAUUACAAAUAAUGCUUUU .......(((...((....))..)))((((((---((-...(((((((((......))))).......(((((((((((.....))).))))))))))))...))))).....))).... ( -30.40) >consensus __GGGUUGCCAUGCCA______________GC___AA_AAUUUCAAACCCUAUUUUGGGUUUCAAAGUUGCUUCCGAUUGGAUAAAUGCGGGAGUAUGAGUAAUUACAAAUAAUGCUUUU ...(((((((((............................(((.((((((......)))))).)))...((((((((((.....))).)))))))))).))))))............... (-19.21 = -19.27 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:57 2006