| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,960,942 – 25,961,053 |
| Length | 111 |
| Max. P | 0.746999 |
| Location | 25,960,942 – 25,961,053 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 79.11 |
| Mean single sequence MFE | -44.62 |
| Consensus MFE | -31.16 |
| Energy contribution | -31.87 |
| Covariance contribution | 0.71 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.746999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25960942 111 - 27905053 CCAGUGGGUCUGACCACCUCCUCGCCGUCCCUUCUGGCGACCAGCGCGGAGAGUUGACCUUCGCGGUCGG---AAAAGAAGCGGGAUCAGCAGGAAAGUCCACUGGAAGAGGAU ((((((((.((..((..((((.(((.(((((....)).)))..))).)))).(((((((..(((..((..---....)).))))).))))).))..))))))))))........ ( -46.80) >DroSec_CAF1 13126 111 - 1 CCAGUGGGUCUGACCACCUCCUCGCCGUCCCUUCUGGCGACCAGUGCGGAGAGUUGACCUUCGCGGUGGG---CAAAAGAGCGGGGUCAGCAGGAAAGUCCACUGGAAGAGGAU ((((((((.((..((..((((.(((.(((((....)).)))..))).)))).((((((((.(((......---.......))))))))))).))..))))))))))........ ( -48.72) >DroSim_CAF1 13144 111 - 1 CCAGUGGGUCUGACCACCUCCUCGCCGUCCCUUCUGGCGACCAGUGCGGAGAGUUGACCUUCGCGGUGGG---CAAAAGAGCGGGGUCAGCAGGAAAGGCCACUGGAAGAGGAU (((((((.(((..((..((((.(((.(((((....)).)))..))).)))).((((((((.(((......---.......))))))))))).))..))))))))))........ ( -48.72) >DroEre_CAF1 11105 96 - 1 CCGGUGGGUCUGACCACCUCCACGCCAUCCCUUCUGGCGACCAGUGCGGAGAGUUGACCUUCGCG------------------GGGUCAGCUGGAAAGGCCACUGGAAGAGGAU (((((((.(((..((..((((.(((..((((....)).))...))).))))(((((((((.....------------------)))))))))))..))))))))))........ ( -42.10) >DroYak_CAF1 11204 111 - 1 CCGGUGGGUCUGACCACCUCCUCGCCAUCCCUUCUGGCGACCAGUGCGGAGAGUUGACCUUUGCGGGGGA---AAACGAAGCGGGGUCAGCAGGAAAGUCCACUGGAAGAGGAU ..(((((......)))))(((((((((.......))))..(((((.......(((((((((.((...(..---...)...))))))))))).((.....)))))))..))))). ( -45.70) >DroAna_CAF1 14404 105 - 1 CCU---GGACUAACCAAUUCGUCGCCCUCUCUGCUGGCAACCAGUGCCGAAAGUUGACCUCCAACCGGGGCAGAAAUGGAGAAGGAUCAGCCGAG------GCGGGAGGCGGGU ..(---((.....)))(((((((.(((((((.((((((..(((.((((....((((.....))))...))))....))).....).))))).)))------).))).))))))) ( -35.70) >consensus CCAGUGGGUCUGACCACCUCCUCGCCGUCCCUUCUGGCGACCAGUGCGGAGAGUUGACCUUCGCGGUGGG___AAAAGGAGCGGGGUCAGCAGGAAAGUCCACUGGAAGAGGAU (((((((......((..((((.(((..((((....)).))...))).)))).(((((((.((((................))))))))))).)).....)))))))........ (-31.16 = -31.87 + 0.71)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:07 2006