Locus 9780

Sequence ID 3R_DroMel_CAF1
Location 25,946,076 – 25,946,177
Length 101
Max. P 0.799825
window15622

overview

Window 2

Location 25,946,076 – 25,946,177
Length 101
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 78.63
Mean single sequence MFE -44.04
Consensus MFE -27.42
Energy contribution -27.32
Covariance contribution -0.11
Combinations/Pair 1.27
Mean z-score -1.74
Structure conservation index 0.62
SVM decision value 0.61
SVM RNA-class probability 0.799825
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25946076 101 - 27905053
---UGACCC-----CGAUGCCC--CAUCCAUCAGGCUGUUCUCAUCGAUGCCACUGUCGCUGGAGGCAUCCGUGUCGCAGGCUGUCAAGCCGGGUGGCACCGAGUCAUCUA
---((((..-----((.(((((--(......(((.((((...(((.((((((.((......)).)))))).)))..)))).)))........)).)))).)).)))).... ( -38.34)
>DroVir_CAF1 119648 107 - 1
---CGACCUCCUGGCCAUA-CCCGUCUCGACCAGGCUGAUGUCAUCGAUGCCGCUGUCACUGGAGGCAUCCGUGUCGCAGGCAGUCAGUGCCGGCGGCAUGAAAUCAUCUA
---......(((((.(...-........).)))))..((((...((.(((((((((.((((((..((...((...))...))..)))))).)))))))))))...)))).. ( -39.50)
>DroPse_CAF1 76244 101 - 1
---CGACAC-----CGAUGAUC--CGUCGACGAGGCUGUUCUCGUCGAUGCCGCUGUCGCUGGAGGCAUCUGUGUCGCAGGCCGUCAGGCCCGGCGGCACGGAGUCGUCCA
---(((((.-----((......--(((((((((((....))))))))))).)).)))))..((((((.((((((((((.((((....))))..))))))))))))).))). ( -54.30)
>DroMoj_CAF1 115594 95 - 1
---CGAGCU-------------CGAGUCGGCCAGGCUGUUCUCAUCGAAGCUGCUGUCACUGGAGGCAUCCGUGUCGCAGGCGGUCAAGCCCGGCGGCAUGGAAUCAUCUA
---.((.((-------------(.(((.(((..((((...........))))...)))))).)))...((((((((((.(((......)))..)))))))))).))..... ( -37.40)
>DroAna_CAF1 72654 104 - 1
CGAUGACCC-----CGAUGCCC--CAUCCACCAGGCUGUUCUCAUCGAUGCCGCUGUCGCUGGAGGCAUCUGUGUCGCAGGCCGUUAAGCCCGGCGGCACCGAAUCGUCCA
.(((((...-----.(((((((--((.(.((..(((...((.....)).)))...)).).))).)))))).(((((((.(((......)))..)))))))....))))).. ( -40.40)
>DroPer_CAF1 75189 101 - 1
---CGACAC-----CGAUGAUC--CGUCGACGAGGCUGUUCUCGUCGAUGCCGCUGUCGCUGGAGGCAUCUGUGUCGCAGGCCGUCAGGCCCGGCGGCACGGAGUCGUCCA
---(((((.-----((......--(((((((((((....))))))))))).)).)))))..((((((.((((((((((.((((....))))..))))))))))))).))). ( -54.30)
>consensus
___CGACCC_____CGAUG_CC__CGUCGACCAGGCUGUUCUCAUCGAUGCCGCUGUCGCUGGAGGCAUCCGUGUCGCAGGCCGUCAAGCCCGGCGGCACGGAAUCAUCCA
.................................((.(((((.....((((((.((......)).))))))((((((((.(((......)))..))))))))))).)).)). (-27.42 = -27.32 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:42:01 2006