Locus 9771

Sequence ID 3R_DroMel_CAF1
Location 25,891,915 – 25,892,033
Length 118
Max. P 0.891260
window15608

overview

Window 8

Location 25,891,915 – 25,892,033
Length 118
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 91.36
Mean single sequence MFE -35.35
Consensus MFE -31.12
Energy contribution -31.48
Covariance contribution 0.36
Combinations/Pair 1.08
Mean z-score -1.50
Structure conservation index 0.88
SVM decision value 0.97
SVM RNA-class probability 0.891260
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25891915 118 - 27905053
AAAACACCGAUGAUUUGGCAAUUAGCGACUCUGCAGAGUUAGUUGUCUUCGCUGGAUGAGUAAGUCCCAUUUAAACCCUGGGUAUCGACUCGUCUACAUUGGCGACGUGUUUUAAUCG
(((((((.........((((((((((...........)))))))))).(((((((((((((..((((((.........)))).))..)))))))).....))))).)))))))..... ( -36.90)
>DroSec_CAF1 19012 118 - 1
AAAACACCGAUGAUUUGGCAAUUAGCGACUCUGCAGAGAUAGUUGUCAUCGCUGGAUGAGUAAGUCCCACUUAAACCCUGGGUAUCGACUCGUCUACAUUGGCGACGUGUUUUAAUCG
(((((((........(((((((((....(((....))).)))))))))(((((((((((((..((((((.........)))).))..)))))))).....))))).)))))))..... ( -37.10)
>DroSim_CAF1 19079 118 - 1
AAAACACCGAUGAUUUGGCAAUUAGCGACUCUGCAGAGUUAGUUGUCAUCGCUGGAUGAGUAAGUCCCACUUAAACCCUGGGUAUCGACUCGUCUACAUUGGCGACGUGUUUUAAUCG
(((((((........(((((((((((...........)))))))))))(((((((((((((..((((((.........)))).))..)))))))).....))))).)))))))..... ( -38.10)
>DroEre_CAF1 26904 116 - 1
AAAACACCGAUAAUUUGGCAAUUGGCGACUCUGCGGAGUUAGUUGUCUUCGCUGGGUGACUAAGCCCCAUUUAGACCCUGGGUUUCGAAUCGUCUAUAUUGGCGACAAGUUUUAAC--
(((((..(((......((((((((((..(.....)..))))))))))...(((((....)).)))((((.........))))..)))..(((((......)))))...)))))...-- ( -30.50)
>DroYak_CAF1 26303 118 - 1
AAAACACCGAUGAUUUGGCAAUUGGCGACUCUGUGGAGUUAGUUGUCUUCGCUGGGUGAGUAAGCCCCAUUAAAACCCUCGGUUUCGACUCGUCCACAUUGGCGACGUGUUUUAAUCG
(((((((.........((((((((((..(.....)..)))))))))).(((((((..(((((((((..............)))))..))))..)).....))))).)))))))..... ( -34.14)
>consensus
AAAACACCGAUGAUUUGGCAAUUAGCGACUCUGCAGAGUUAGUUGUCUUCGCUGGAUGAGUAAGUCCCAUUUAAACCCUGGGUAUCGACUCGUCUACAUUGGCGACGUGUUUUAAUCG
(((((((.........((((((((...((((....)))))))))))).(((((((((((((....((((.........)))).....)))))))).....))))).)))))))..... (-31.12 = -31.48 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:49 2006