Locus 9768

Sequence ID 3R_DroMel_CAF1
Location 25,876,283 – 25,876,383
Length 100
Max. P 0.516633
window15605

overview

Window 5

Location 25,876,283 – 25,876,383
Length 100
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 80.63
Mean single sequence MFE -17.40
Consensus MFE -11.53
Energy contribution -12.75
Covariance contribution 1.22
Combinations/Pair 1.08
Mean z-score -1.31
Structure conservation index 0.66
SVM decision value -0.03
SVM RNA-class probability 0.516633
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25876283 100 - 27905053
GUGAUUAUUAUUUAAUGACGACGCCGAGUCGCCGUAAACAUAUAAUAAAACCGAAAAGA-ACAAGCCAU-U--UUGAAACAACACACAAAAUGGCAAUACUCUC
(((.(((((((...(((.((((.....)))).)))......)))))))...........-....(((((-(--(((..........)))))))))..))).... ( -20.20)
>DroPse_CAF1 3245 100 - 1
GUGAUUAUUAUUUAAUGACGACGAGAAGUCGCCGUAAACAUAUAAUAAAACGAAACAAAAAUUCGCCAC-GCACCAUCG---CACAGACCCUGGCUAUACUCUU
(((.(((((((...(((.((((.....)))).)))......)))))))..((((.......)))).)))-........(---(.(((...)))))......... ( -15.30)
>DroEre_CAF1 3559 97 - 1
GUGAUUAUUAUUUAAUGACGACGAAGAGUCGCCGUAAACAUAUAAUAAAACCAAAAGGA-ACAAGCCAU-U--UUGACA---CACAGAAAGUGGCAAUACACUU
(((.(((((((...(((.((((.....)))).)))......)))))))..((....)).-....(((((-(--((....---.....))))))))....))).. ( -20.30)
>DroYak_CAF1 3491 96 - 1
GUGAUUAUUAUUUAAUGACGACGCCGAGUCGCCGUAAACAUAUAAUAAAACCAAAAGGA-ACCAGCCAU-U--CUGACA---CACAGAAAGUGGCAAUACUCU-
....(((((((...(((.((((.....)))).)))......)))))))..((....)).-....(((((-(--(((...---..))))..)))))........- ( -19.80)
>DroAna_CAF1 3905 97 - 1
GUGAUUAUUAUUUAAUGACGACGAAAAGUCGCCGUAAACAUAUAAUAAAACCAAAAGAA-AU-AUUCAUCG--UUGACA---CUCAGAAGACGCCUAUACACUU
(((.(((((((...(((.((((.....)))).)))......)))))))...........-..-......((--((..(.---....)..))))......))).. ( -12.30)
>DroPer_CAF1 3238 100 - 1
GUGAUUAUUAUUUAAUGACGACGAGAAGUCGCCGUAAACAUAUAAUAAAACGAAACAAAAAUUCGCCAC-GCACCGUCG---CACAGACCCUGGCCAUACUCUU
(((.(((((((...(((.((((.....)))).)))......)))))))..((((.......)))).)))-((...(((.---....)))....))......... ( -16.50)
>consensus
GUGAUUAUUAUUUAAUGACGACGAAAAGUCGCCGUAAACAUAUAAUAAAACCAAAAAAA_ACAAGCCAU_G__CUGACA___CACAGAAAAUGGCAAUACUCUU
(((.(((((((...(((.((((.....)))).)))......)))))))................(((((....(((........)))...)))))..))).... (-11.53 = -12.75 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:46 2006