Locus 9766

Sequence ID 3R_DroMel_CAF1
Location 25,869,102 – 25,869,202
Length 100
Max. P 0.874416
window15602

overview

Window 2

Location 25,869,102 – 25,869,202
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 92.30
Mean single sequence MFE -20.68
Consensus MFE -16.24
Energy contribution -16.68
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.93
Structure conservation index 0.79
SVM decision value 0.89
SVM RNA-class probability 0.874416
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25869102 100 + 27905053
AUCAUUUUGCCAACUCUAUUAAAUUUCAUACACAAUUUAAAAGAUUGUAAACAAACGCCGCACGAAACGGAAUCGCUAAAAGGACCAUCGUCGGCGCAAU
......(((((((.(((.(((((((........))))))).)))))).........((((.((((...((..((........)))).)))))))))))). ( -19.40)
>DroSec_CAF1 20348 100 + 1
AUCAUUUUGCCAACUCUAUUAAAUUCCAUACACAAUUUAAAAGGUUGUAAACAAACGCCGCCCGAAACGGAAUCGCUAAAAGGACCACCGUCGGCGCAAU
......((((((((.((.(((((((........))))))).)))))).........((((......((((..((........))...)))))))))))). ( -19.20)
>DroSim_CAF1 21203 100 + 1
AUCAUUUUGCCAACUCUAUUAAAUUCCAUACACAAUUUAAAAGGUUGUAAACAAACGCCGCCCGAAACGGAAUCGCUAAAAGGACCACCGUCGGCGCAAU
......((((((((.((.(((((((........))))))).)))))).........((((......((((..((........))...)))))))))))). ( -19.20)
>DroEre_CAF1 21318 100 + 1
AUCAUUUUGCCAACUCUAUUAAAUUCCAUACACAAUUUAAAAGGUUGUAAACAAAAGCCGCCGGACCCGGAAUCGCUGUAAGGACAACCGUCGGCGCAAU
........(((.((....(((((((........)))))))..((((((.......(((..(((....)))....)))......)))))))).)))..... ( -24.22)
>DroYak_CAF1 15919 100 + 1
AUCAUUUUGCCAACUCUAUUAAAUUCCAUACACAAUUUAAAAGGUUGUAAACAAAAGCCGCUAUACCCGGAAUCGGCACUAGGACAACCGUCGGCGCAAU
......((((((((.((.(((((((........))))))).)))))).........(((.(((...(((....)))...)))(((....)))))))))). ( -21.40)
>consensus
AUCAUUUUGCCAACUCUAUUAAAUUCCAUACACAAUUUAAAAGGUUGUAAACAAACGCCGCCCGAAACGGAAUCGCUAAAAGGACCACCGUCGGCGCAAU
......((((((((.((.(((((((........))))))).)))))).........((((......((((..((........))...)))))))))))). (-16.24 = -16.68 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:44 2006