| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,856,205 – 25,856,305 |
| Length | 100 |
| Max. P | 0.630448 |
| Location | 25,856,205 – 25,856,305 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 71.72 |
| Mean single sequence MFE | -29.79 |
| Consensus MFE | -13.15 |
| Energy contribution | -14.58 |
| Covariance contribution | 1.43 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.630448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25856205 100 - 27905053 CAGGAUCGCAAUUU-------GCGGUGCAGGUAUCGAAAUCGAAACCGCACUGGUAAUUGGAGCCGUAAUGGGCAUGGG------------AAAUCCUCAAGGAUGCGGAUGCGAAGCC ..((.(((((.(((-------(((((((.(((.(((....))).))))))))..........(((......))).....------------..((((....))))))))))))))..)) ( -34.20) >DroSec_CAF1 7523 106 - 1 UAGGAUCGCAAUUU-------GCGGUGCAGGUAUCGAAAUCGAAACCGCACUUGUAAUUGGAGCCGUAAUGAGAA------UGGCAAAGGCAAAUCCUCAAGGAUGCGGAUGCCAAGCC ..((.(((((.(((-------(((((((.(((.(((....))).))))))))..........(((((.......)------))))....)))))(((....))))))))...))..... ( -34.70) >DroSim_CAF1 7519 112 - 1 CAGGAUCGCAAUUU-------GCGGUGCAGGUAUCGAAAUCGAAACCGCACUCGUAAUUGGAGCCGUAAUGAGAAUGGGAAUGGCAAAGGCAAAUCCUCAAGGAUGCGGAUGCGAAGCC ..((.(((((..((-------(((((((.(((.(((....))).))))))).)))))......(((((........((((...((....))...))))......))))).)))))..)) ( -36.04) >DroEre_CAF1 8291 94 - 1 CAGGAUCGCAAUUU-------GCGGUGCAGGUAUCGAAAUCGAAACCGCACUCGUAAUUGGAGCCGUAAUGGGAAUGGU------------AAAUCCUCAAGGAUGCGGA------ACU .((..(((((..((-------(((((((.(((.(((....))).))))))).)))))..((((((((.......)))))------------...))).......))))).------.)) ( -31.10) >DroYak_CAF1 2994 107 - 1 CAGAAUCGCAAUUUGCAAUCUGCGCUGCAGGCAUCGAAAUCGAAACCGUACUCGUAAUUGGAGCCGUAAUGGGCAUGGG------------AAAUCCUCAAGGAUGCGGAUGCAAAGCC .......((..((((((.(((((((.....)).(((....)))..((((.(((((...((....))..))))).)))).------------..((((....))))))))))))))))). ( -29.30) >DroAna_CAF1 7494 76 - 1 CCAAUUUGC-AUUU-------GCAGUCCA--------UAUCAA----GCAAUCGCAAUUGAAAUUUUAAUAGGAAUC-----------------CUCUCAAGGAUACUGACGC------ .(((((.((-..((-------((......--------......----))))..))))))).........(((..(((-----------------((....))))).)))....------ ( -13.40) >consensus CAGGAUCGCAAUUU_______GCGGUGCAGGUAUCGAAAUCGAAACCGCACUCGUAAUUGGAGCCGUAAUGGGAAUGGG____________AAAUCCUCAAGGAUGCGGAUGC_AAGCC .....((((............(((((((.(((.(((....))).)))))))).))......................................((((....)))))))).......... (-13.15 = -14.58 + 1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:38 2006