Locus 9752

Sequence ID 3R_DroMel_CAF1
Location 25,821,806 – 25,821,924
Length 118
Max. P 0.568679
window15576

overview

Window 6

Location 25,821,806 – 25,821,924
Length 118
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 76.78
Mean single sequence MFE -38.15
Consensus MFE -19.92
Energy contribution -19.73
Covariance contribution -0.19
Combinations/Pair 1.39
Mean z-score -1.73
Structure conservation index 0.52
SVM decision value 0.07
SVM RNA-class probability 0.568679
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25821806 118 + 27905053
AAAGCAUGCUGCCGAGGUCCAUCAAUACCAGGAAAAACUGUCCAAAAUAAACGAGCAGCGCAGCAAUGAGCUGGAGAGAAAUCGUAGAGCGAUCUCCGGCUUUCAGGCCCAAUUGGAC
...((..(((((((.(((........))).(((.......)))........)).))))))).((...((((((((((....(((.....)))))))))))))....))((....)).. ( -37.20)
>DroVir_CAF1 86148 118 + 1
AAAGCACUCGGCCGAGCUGCAACAUAUGCAGGAUAAGCUGGAGAAGCUAAACGAGCAGCGUGCCAAUGAGCUGGAGCGCAGCCGCCGCUCGGUUGCCGGACUGCAGACGCAGUUGGAG
........(((((((((((((.....))))((...((((.....))))...((.((.((((.(((......))).)))).))))))))))))))).(.((((((....)))))).).. ( -46.10)
>DroPse_CAF1 68783 118 + 1
GAAACACGCUGCUGAGCUGCUCCAAAUGCAGGAGAAAGUGGCCAAGGUGAACGAGCAGCGCAGCAACGAGUUGGAACGCAAUCGCAGAUCGAUCUCCAGCAUCCAGACACAGUUGGAG
......((.(((((.(((((((........((.........))...(....)))))))).))))).)).((((((..((....)).((....)))))))).(((((......))))). ( -36.60)
>DroEre_CAF1 66332 118 + 1
GAAGCAUGCUGCAGAGGUCCGUCAAUACCAGGAAAAACUGGUCAAAAUAAACGAGCAGCGCAGCAAUGAGCUGGAGAGAAAUCGUAGAGCGAUCUGCGGCUUUCAGUCCCAAUUGGAC
..(((.((((((.(..(..(((..(((((((......)))))....))..)))..)..)))))))....))).(((((...(((((((....)))))))))))).((((.....)))) ( -37.00)
>DroYak_CAF1 65743 118 + 1
GAAGCAUGCUGCCGAGGUUCAUCAAUACCAGGAAAAACUGACCAAACUAAAUGAGCAGCGCAAUAAUGAGCUGGAGAGACAUCGUCGAGCGAUCUCCGGCUUUCAGUCGCAAAUGGAC
....((((((((((.(((........))).((.........))........)).)))))((.((...((((((((((....(((.....)))))))))))))...)).))..)))... ( -33.00)
>DroPer_CAF1 72286 118 + 1
GAAACACGCUGCUGAGCUGCUCCAAAUGCAGGAGAAAGUGGCCAAGGUGAACGAGCAGCGCAGCAACGAGCUGGAACGCAAUCGCAGAUCGAUCUCCAGCAUCCAGACACAGUUGGAG
......((.(((((.(((((((........((.........))...(....)))))))).))))).)).((((((..((....)).((....)))))))).(((((......))))). ( -39.00)
>consensus
GAAGCACGCUGCCGAGCUGCAUCAAAACCAGGAAAAACUGGCCAAAAUAAACGAGCAGCGCAGCAAUGAGCUGGAGAGAAAUCGCAGAGCGAUCUCCGGCUUUCAGACACAAUUGGAC
......((((((((.((..........)).((.........))........)).)))))).........(((((((....((((.....))))))))))).(((((......))))). (-19.92 = -19.73 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:21 2006