Locus 9749

Sequence ID 3R_DroMel_CAF1
Location 25,805,420 – 25,805,536
Length 116
Max. P 0.562867
window15572

overview

Window 2

Location 25,805,420 – 25,805,536
Length 116
Sequences 3
Columns 116
Reading direction forward
Mean pairwise identity 56.48
Mean single sequence MFE -22.18
Consensus MFE -5.67
Energy contribution -5.67
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.94
Structure conservation index 0.26
SVM decision value 0.06
SVM RNA-class probability 0.562867
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25805420 116 + 27905053
CUGUCCAAGAUAAAGAGUUGGACUAAUACCUUUUUAUCAUUUAUUAAGUGCAUGGCAUUUGGCUUUACAGAAGCCCUUGGAUUCGUCCAACCAUUCAGUAACUUUUUAUUAAUCAU
........(((((((((((((((.(((.((...............((((((...))))))((((((...))))))...))))).)))).((......)))))))))))))...... ( -24.90)
>DroSim_CAF1 47250 96 + 1
CUGUCGAAUAAAAGGGCAUAAACUAAUGCCCUUUUAUCAUUUAUUAAAAGCAUGGCAUUUGGCUUAACAGAAGCCCU------------------CACUAACU--UUAUUAGUUAU
.....((.(((((((((((......)))))))))))))...............(((.((((......)))).)))..------------------...(((((--.....))))). ( -25.40)
>DroYak_CAF1 49136 92 + 1
-----CAA----AUG-AUUGAAUUAAUACUUUUUUAUCGACCUUUA----------AUUGGGCUUCUCAGAAGCCCUUG-AUGCUUUUUACUAUUC---ACUUAUUAAUCACUUAU
-----..(----(((-(.(((((...........((((((......----------...(((((((...))))))))))-))).........))))---).))))).......... ( -16.25)
>consensus
CUGUCCAA_A_AAAG_AUUGAACUAAUACCUUUUUAUCAUUUAUUAA__GCAUGGCAUUUGGCUUAACAGAAGCCCUUG_AU_C_U___AC_AUUCA_UAACU_UUUAUUAAUUAU
............................................................(((((.....)))))......................................... ( -5.67 =  -5.67 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:41:17 2006