Locus 9734

Sequence ID 3R_DroMel_CAF1
Location 25,753,051 – 25,753,158
Length 107
Max. P 0.582927
window15551

overview

Window 1

Location 25,753,051 – 25,753,158
Length 107
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 76.87
Mean single sequence MFE -21.72
Consensus MFE -13.17
Energy contribution -12.84
Covariance contribution -0.33
Combinations/Pair 1.29
Mean z-score -1.40
Structure conservation index 0.61
SVM decision value 0.10
SVM RNA-class probability 0.582927
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25753051 107 + 27905053
UAAAUAAAGCAUAAAUAAUACAAUUAAAAGUUGAGCGCGCUCCCUUCGCAAAGGACAUUCCCACACUUGUAGCCCACUUCCUUCGGGCAGUGC-AACACAAAAGUGCA
........((((........((((.....))))...(((((.((((....)))).................((((.........)))))))))-.........)))). ( -21.70)
>DroPse_CAF1 22648 98 + 1
---------AUUUCAUAAUAAAAUUAAAACUGUUGCGGGCACCAUUCGCAUAACUCAUCCGC-CCCUUCAAGCAGGAUUCCUUUCUGCAGUGGAAACAACAAAGUGCA
---------.....................(((((.((((....................))-)).((((.((((((.....))))))..))))..)))))....... ( -18.15)
>DroSec_CAF1 22405 107 + 1
UAAACAAAGCAUAAAUAAUACAAUUAAAAGUUAAGCGCGCUCCAUUCGCACAGGACAUUCCCACACUUGUGGCCCACUUCCUUCGGGCAGUGC-AACAAAAAAGUGCA
........((((.................(((..(.(((.......))).)..)))....((((....))))..((((.((....)).)))).-.........)))). ( -22.50)
>DroSim_CAF1 20567 107 + 1
UAAACAAAGCAUAAAUAAUACAAUUAAAAGUUGAGCGCGCUCCCUUCGCACAGGACAUUCCCACACUUGUGGCCCACUUCCUUCGGGCAGUGC-AACAAAAAAGUGCA
........((((........((((.....))))...((((((((.......((((.....((((....))))......))))..))).)))))-.........)))). ( -24.50)
>DroEre_CAF1 17969 107 + 1
UAAACAAAGCAUAAAUAAUACAAUUAAAAGUUGGGCGCGCUGCCUUCGCACAGGACAUUCCCACACUUGCAGCCCAUUUCCUUCGGGCAGUGC-AGCAACAAAGUGCA
........((((........((((.....)))).....(((((((..(((..((......)).....))).((((.........)))))).))-)))......)))). ( -25.30)
>DroPer_CAF1 22710 98 + 1
---------AUUUCAUAAUAAAAUUAAAACUGUUGCGGGCACCAUUCGCAUAACUCAUCCGC-CCCUUCAAGCAGGAUUCCUUUCUGCAGUGGAAACAACAAAGUGCA
---------.....................(((((.((((....................))-)).((((.((((((.....))))))..))))..)))))....... ( -18.15)
>consensus
UAAACAAAGCAUAAAUAAUACAAUUAAAAGUUGAGCGCGCUCCAUUCGCACAGGACAUUCCCACACUUGUAGCCCACUUCCUUCGGGCAGUGC_AACAAAAAAGUGCA
..................................((((.........((((.((......)).........((((.........)))).))))..........)))). (-13.17 = -12.84 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:58 2006