Locus 9730

Sequence ID 3R_DroMel_CAF1
Location 25,745,207 – 25,745,306
Length 99
Max. P 0.682608
window15542

overview

Window 2

Location 25,745,207 – 25,745,306
Length 99
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 82.42
Mean single sequence MFE -30.65
Consensus MFE -24.79
Energy contribution -25.18
Covariance contribution 0.39
Combinations/Pair 1.22
Mean z-score -1.56
Structure conservation index 0.81
SVM decision value 0.31
SVM RNA-class probability 0.682608
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25745207 99 - 27905053
UCU---UACUCUUUUC---CCC---U-CCUUUGGCAGAGCUGGGAGGCGGUGGACCGCUCCAAGUCCACCUUCACCGUGGACAUCACGCCCCUUAUCCUGGCCGCCCAC
...---..........---...---.-.....(((.(.((..(((((((((((((........)))))))......(((.....)))))).....)))..))))))... ( -32.80)
>DroSec_CAF1 10371 99 - 1
UCU---UACUCUUUUC---CCC---U-CCUUUGGCAGAGCUGGGAGGCGGUGGACCGCUCCAAGUCCACCUUCACCGUGGACAUCACGCCUCUUAUCCUGGCUGCCCAC
...---..........---...---.-.....(((((.(.(((((((((((((((........)))))))......(((.....))))))))))).)....)))))... ( -34.90)
>DroSim_CAF1 10282 99 - 1
UCU---UACUCUUUUC---CCC---U-CCUUUGGCAGAGCUGGGAGGCGGUGGACCGCUCCAAGUCCACCUUCACCGUGGACAUCACGCCCCUUAUCCUGGCUGCCCAC
...---..........---...---.-.....((((..((..(((((((((((((........)))))))......(((.....)))))).....)))..))))))... ( -33.50)
>DroWil_CAF1 22023 106 - 1
UCU---UUUUCAUUUGAUUCAGUACUGAUUUUAAUAGAGCUGGGAGGCAGUUGACCGCUCCAAGUCAACCUUCACCAUGGACAUUACCCCGCUAAUUCUGGCUGCACAU
...---.....(((.((.(((....))).)).)))..(((..((((((.((((((........)))))).........((........)))))..)))..)))...... ( -20.30)
>DroYak_CAF1 10551 102 - 1
UCU---UAUUCAUUUA---CCCUACU-CCUUUGGCAGAGCUGGGAGGCGGUGGACCGCUCCAAGUCCACCUUCACCGUGGACAUCACGCCCCUGAUCCUGGCCGCCCAC
...---..........---.......-.....(((.(.((..(((((((((((((........)))))))......(((.....)))))).....)))..))))))... ( -32.80)
>DroAna_CAF1 11365 99 - 1
CCUGUGUAAUGAGAUC---C-------UUUUCGGCAGAGCUGGGAGGCAGUGGACCGUUCGAAGUCGACCUUCACCGUGGACAUCACGCCCCUUAUCCUAGCGGCCCAU
..........((((..---.-------.))))(((...((((((((((.(((((..(.(((....))).)))))).(((.....)))))).....))))))).)))... ( -29.60)
>consensus
UCU___UACUCAUUUC___CCC___U_CCUUUGGCAGAGCUGGGAGGCGGUGGACCGCUCCAAGUCCACCUUCACCGUGGACAUCACGCCCCUUAUCCUGGCUGCCCAC
................................(((...(((((((((((((((((........)))))))......(((.....)))))).....))))))).)))... (-24.79 = -25.18 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:40:50 2006