Locus 972

Sequence ID 3R_DroMel_CAF1
Location 3,158,912 – 3,159,023
Length 111
Max. P 0.631741
window1560

overview

Window 0

Location 3,158,912 – 3,159,023
Length 111
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 92.21
Mean single sequence MFE -29.88
Consensus MFE -25.69
Energy contribution -26.38
Covariance contribution 0.69
Combinations/Pair 1.09
Mean z-score -1.51
Structure conservation index 0.86
SVM decision value 0.20
SVM RNA-class probability 0.631741
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3158912 111 - 27905053
UCCCUUUGUGUAU--------ACAUGUCUUGUAAAAGGAGCAACAAUGGCAGCACCCCGGGGUCCAAAACAACUUUUGUCAACACACAAACACCCCGCCUGCCAUAGUGUGCAUGUGUU-
.......((((((--------((.((((((.....)))).))...(((((((.....((((((...........(((((......))))).)))))).))))))).)))))))).....- ( -30.10)
>DroSec_CAF1 6788 111 - 1
UCCCUUUGUGUAU--------ACAUGUCUUGUAAAAGAAGCAACAAUGGCAGCACCCCGGGUUCCAAAACAACUUUUGUCAACACACAAACACCCCGCCUGCCAUUGUGUGCGUGUGUU-
...........((--------((((.((((....)))).(((((((((((((.....((((((....)))....(((((......)))))....))).)))))))))).))))))))).- ( -28.40)
>DroSim_CAF1 8964 111 - 1
UCCCUUUGUGUAU--------ACAUGUCUUGUAAAAGAAGCAACAAUGGCAGCACCCCGGGGUCCAAAACAACUUUUGUCAACACACAAACACCCCGCCUGCCAUUGUGUGCGUGUGUU-
...........((--------((((.((((....)))).(((((((((((((.....((((((...........(((((......))))).)))))).)))))))))).))))))))).- ( -33.50)
>DroYak_CAF1 8319 120 - 1
GCCCUUUGUGUAUAUGUGUGUACAUGUCUUGUAAGAGAAGCAACAAUGGCAGCACCCCGGGGUCCAAAACAACUUUUGUCAACACACAAACACCCCGCCACCCUUUGUGUGCGUGUGUUU
(((..(((((((((....)))))...((((....))))....)))).))).((((...(((((...........(((((......))))).)))))(((((.....))).)))))).... ( -27.50)
>consensus
UCCCUUUGUGUAU________ACAUGUCUUGUAAAAGAAGCAACAAUGGCAGCACCCCGGGGUCCAAAACAACUUUUGUCAACACACAAACACCCCGCCUGCCAUUGUGUGCGUGUGUU_
.....................((((.((((....)))).(((((((((((((.....((((((...........(((((......))))).)))))).)))))))))).))))))).... (-25.69 = -26.38 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:02 2006