Locus 970

Sequence ID 3R_DroMel_CAF1
Location 3,157,608 – 3,157,723
Length 115
Max. P 0.824444
window1554

overview

Window 4

Location 3,157,608 – 3,157,723
Length 115
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.21
Mean single sequence MFE -26.28
Consensus MFE -22.33
Energy contribution -23.33
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.78
Structure conservation index 0.85
SVM decision value 0.69
SVM RNA-class probability 0.824444
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3157608 115 - 27905053
----UCGAUA-UUAUAUGUUUUUUCCUGUGCAUCUCCUUUGAUCUUCUCUUUUCGGCUGAUCAAAAUUCUGGCCAGGUCGACUGAGUGACAGACGUUUACUUAGUUGUUAUCAUUCUGGU
----..((((-.............((((.((......(((((((..((......))..)))))))......)))))).(((((((((((.......))))))))))).))))........ ( -28.50)
>DroSec_CAF1 5463 116 - 1
----UUAAUGGUUAAAUAUUUCUUCCUGUGCAUCUCCCUUGAUCUUCUCUUUUCGGCUGAUCAAAAUUCUGGCCAGGUCGACUGAGUGACAGACGUUUACUUAGUUGUUAUCAUUCUGCU
----..((((((............((((.((.......((((((..((......))..)))))).......)))))).(((((((((((.......)))))))))))..))))))..... ( -26.94)
>DroSim_CAF1 7607 115 - 1
----UUAAUG-UUAAAUAUUUCUUCCUGUGCAUCUCCUUUGAUCUCCUCUUUUCGGCUGAUCAAAAUUCUGGCCAGGUCGACUGAGUGACAGACGUUUACUUAGUUGUUAUCAUUCUGCU
----..((((-.(((.........((((.((......(((((((.((.......))..)))))))......)))))).(((((((((((.......)))))))))))))).))))..... ( -27.80)
>DroYak_CAF1 5160 119 - 1
UCCUUUUAUG-UUUUAUGUUUCUUCCGGUGCAUCUGCUUGAAUCUCCUCUUUUCGGCUGAUCAAAAUUCUGGCCAGGUCGACUGAGUGACAGACGUUUACUUAGUUGUUAUCAUUCUGCU
..........-....((((.((....)).))))..((..((((...........((((((.......)).)))).((((((((((((((.......)))))))))))..))))))).)). ( -21.90)
>consensus
____UUAAUG_UUAAAUAUUUCUUCCUGUGCAUCUCCUUUGAUCUCCUCUUUUCGGCUGAUCAAAAUUCUGGCCAGGUCGACUGAGUGACAGACGUUUACUUAGUUGUUAUCAUUCUGCU
........................((((.((......(((((((..((......))..)))))))......)))))).(((((((((((.......)))))))))))............. (-22.33 = -23.33 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:56 2006