Locus 97

Sequence ID 3R_DroMel_CAF1
Location 603,011 – 603,101
Length 90
Max. P 0.559127
window163

overview

Window 3

Location 603,011 – 603,101
Length 90
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 79.20
Mean single sequence MFE -37.37
Consensus MFE -20.59
Energy contribution -20.02
Covariance contribution -0.58
Combinations/Pair 1.44
Mean z-score -1.78
Structure conservation index 0.55
SVM decision value 0.05
SVM RNA-class probability 0.559127
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 603011 90 - 27905053
CCGGCUGGGCGAUCGCGACCCA------GAGCCAGAUCUGGAGCCCGAACGUGAUCGGGAACCGGACUUGGAUCUCGACCUAGAACGCGACCGAGA
..(((((((((....)).))).------.))))...(((((..(((((......)))))..)))))(((((.((.((........)).))))))). ( -35.90)
>DroSec_CAF1 19093 90 - 1
CCGGCUGGGCGAUCGCGAUCCA------GAGCCAGAUCUGGAGCCCGAACGGGAUCGGGAACCGGACUUGGAGCGCGACCGAGAACGAGACCGAGA
.(((((.(.((.(((((.((((------(..((.(.(((.((.(((....))).)).))).).))..))))).))))).))....).)).)))... ( -38.90)
>DroSim_CAF1 18245 90 - 1
CCGGCUGGGCGAUCGCGAUCCA------GAGCCAGAUCUGGAGCCCGAACGGGAUCGGGAACCGGACUUGGAUCGCGACCGAGAACGAGACCGAGA
.(((((.(.((.((((((((((------(..((.(.(((.((.(((....))).)).))).).))..))))))))))).))....).)).)))... ( -43.50)
>DroEre_CAF1 21546 90 - 1
UCGGCUGGGCGACCGCGAUCCA------GAGCCAGAUCUGGAGCCCGAACGGGAGCGGGAGCCGGAUUUGGAUCCAGAUCGAGAACGCGACCGAGA
((((....(((..(.(((((..------((.((((((((((..((((........))))..)))))))))).))..))))).)..)))..)))).. ( -42.20)
>DroYak_CAF1 24439 84 - 1
UCGGCUGGGCGAAUGCG------------AGCCAGAUCUGGAGCCCGAACGGGAUCGGGAACCGGACUUGGAUCUAGAUCGAGAACGCGACCGAGA
((((....(((....((------------(.((((.(((((..(((((......)))))..))))).)))).......)))....)))..)))).. ( -30.70)
>DroAna_CAF1 22629 96 - 1
CCGCGUCGGUGAACGGGAGCCGGAUCGUGAGCGGGAUCCGGACUUUGAACGGGAGUGGGAACGAGACCUCGAUCUGGAAGGGGUUCGGGAACGUGA
((((..(.((...((((..(((((((.(....).)))))))..)))).)).)..))))...((((.((((.........))))))))......... ( -33.00)
>consensus
CCGGCUGGGCGAUCGCGAUCCA______GAGCCAGAUCUGGAGCCCGAACGGGAUCGGGAACCGGACUUGGAUCUCGACCGAGAACGCGACCGAGA
.(((....((....))...............((((.(((((..((((........))))..))))).))))...................)))... (-20.59 = -20.02 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:59 2006