| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,614,585 – 25,614,680 |
| Length | 95 |
| Max. P | 0.690919 |
| Location | 25,614,585 – 25,614,680 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 81.55 |
| Mean single sequence MFE | -31.33 |
| Consensus MFE | -18.58 |
| Energy contribution | -19.30 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.690919 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25614585 95 - 27905053 UGGUUCGUUGUUCGUUUGCGACUGAAUCGCAUCAGAAUCUCCGGCGAGCGAAAUUGGCAACGAUCGCGAUCGAGAGAUCGCCGCAGAUGUAUGCA .((((((((((......))))).)))))((((....((((.((((..((((..(((....)))))))((((....)))))))).))))..)))). ( -40.40) >DroSec_CAF1 41271 85 - 1 UGGUUCGUUGUUCGUUUGCGACUGAAUCGCAUCAGUAUCUCCGGCGAGCGAAAUUGGCAACGAUCGCGAUCGAGAG----------AUGUGUGCA .((((((((((......))))).)))))(((.((.(((((((((...((((..(((....)))))))..))).)))----------)))))))). ( -31.80) >DroSim_CAF1 42203 85 - 1 UGGUUCGUUGUUCGUUUGCGACUGAAUCGCAUCAGAAUCUCCGGCGAGCGAAAUUGGCAACGAUCGCGAUCGAGAG----------AUGUAUGCA .((((((((((......))))).)))))((((....((((((((...((((..(((....)))))))..))).)))----------))..)))). ( -30.50) >DroEre_CAF1 42398 95 - 1 UGGUUCGUUGUUCGUUUGCGACUGAAUCGCAACAGAAUCUCCGGCGAGCGAAAUUGGCAACGAUCGCGAUCGAGAGAUCUCCGCGGAUAUAUGUA .((((((((((......))))).)))))...(((..((.((((.((.((((..(((....)))))))((((....))))..)))))).)).))). ( -32.20) >DroYak_CAF1 44613 95 - 1 UGGUUCGUUGUUCGUUUGCGACUGAAUCGCAUCAGAAUCUCCGGCGAGCGAAAUUGGCAACGAUCGCGAUCGAGAGAUCUCUGCGGAUAAAUAUA .......(((((((..(((((.....))))).((((((((((((...((((..(((....)))))))..))).))))).)))))))))))..... ( -30.40) >DroAna_CAF1 43954 81 - 1 UGGUUCGUUGUUCGUUUGCGACUGAAU-------------CUGGCGAGCGAAAUUGGCAACACUCAAGAUCGCGAUCACGCCGUACCUCAAUAC- .((((((((((......))))).))))-------------).((((.((((..((((......))))..)))).....))))............- ( -22.70) >consensus UGGUUCGUUGUUCGUUUGCGACUGAAUCGCAUCAGAAUCUCCGGCGAGCGAAAUUGGCAACGAUCGCGAUCGAGAGAUC_CCGC_GAUGUAUGCA .((((((((((......))))).)))))..........((((((...((((..(((....)))))))..))).)))................... (-18.58 = -19.30 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:48 2006