Locus 968

Sequence ID 3R_DroMel_CAF1
Location 3,157,031 – 3,157,150
Length 119
Max. P 0.569462
window1551

overview

Window 1

Location 3,157,031 – 3,157,150
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 92.59
Mean single sequence MFE -29.32
Consensus MFE -22.06
Energy contribution -22.12
Covariance contribution 0.06
Combinations/Pair 1.08
Mean z-score -1.91
Structure conservation index 0.75
SVM decision value 0.07
SVM RNA-class probability 0.569462
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3157031 119 + 27905053
CCAUGAUCCAAUGUCGCAAUAUCGAAUGAAAGCGAAAGUGUCGCUCAUUUGAAUACCUGGCUAUUCAGUCUAUCCGCUAGACUGACCACUUUCAAUUAUCUGACACGUUGGAA-AAAAGU
......((((((((..((...((((((((..((((.....)))))))))))).....(((....((((((((.....)))))))))))............))..)))))))).-...... ( -33.00)
>DroSec_CAF1 4889 113 + 1
CCAUGAUCCAGUGUCGCAAUAUCGAAUGAAAGCGAAAGUGUCGCUCAUUUGAAUACCUGGCU-----GUCUAUCCGCUAGACUGACCACUUUCAAUUAUCUGACACGUUG-AA-AAAAGU
..........(((((......((((((((..((((.....)))))))))))).....((((.-----(((((.....))))).).))).............)))))....-..-...... ( -27.10)
>DroSim_CAF1 7032 114 + 1
CCAUGAUCCAGUGUCGCAAUAUCGAAUGAAAGCGAAAGUGUCGCUCAUUUGAAUACCUGGCU-----GUCUAUCCGCUAGACUGACCACUUUCAAUUAUCUGACGCGUUGGAA-AAAAGU
......(((((((((......((((((((..((((.....)))))))))))).....((((.-----(((((.....))))).).))).............)))))..)))).-...... ( -29.90)
>DroYak_CAF1 4585 115 + 1
CCAUGAUCCAAUGACGCUAUUUCGAAUGAAAGCGAAAGUGUCGCUCAUUUGAAUAUCUGCAU-----GUCUAUUCGCUAGACUGACCACUUUCAAUUAUCUGACACUUUGGAAAAAAAGU
......(((.....((((.((......)).))))(((((((((.....(((((......((.-----(((((.....)))))))......))))).....))))))))))))........ ( -27.30)
>consensus
CCAUGAUCCAAUGUCGCAAUAUCGAAUGAAAGCGAAAGUGUCGCUCAUUUGAAUACCUGGCU_____GUCUAUCCGCUAGACUGACCACUUUCAAUUAUCUGACACGUUGGAA_AAAAGU
......(((((((((......((((((((..((((.....))))))))))))...............(((((.....)))))...................))))..)))))........ (-22.06 = -22.12 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:53 2006