| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,588,576 – 25,588,666 |
| Length | 90 |
| Max. P | 0.620597 |
| Location | 25,588,576 – 25,588,666 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 65.84 |
| Mean single sequence MFE | -31.86 |
| Consensus MFE | -10.09 |
| Energy contribution | -10.07 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.32 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.620597 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25588576 90 + 27905053 -UUUUACCGC-----------C--GCAGA---AGU-----CGUGCGAUUUAAAACGCCCACGGCAUCUGCAGA-AGAAUGGCUUCUGUUCUUCGGCGCCC----GAAUUCUUCUGCG -......(((-----------(--(((((---.((-----((((((........)))..))))).))))).((-(((((((...)))))))))))))...----............. ( -32.80) >DroSec_CAF1 15735 76 + 1 ----------------------------A---AGU-----CGUGCGACUUGAAACGCCCACGGCAUCUGCAGA-AGAACGGCUUAUGUUCUUCGGCGCCC----GAAUUCUUCUGCG ----------------------------.---.((-----((((((........)))..)))))....(((((-(((((((.....((.(....).))))----)..))))))))). ( -25.50) >DroSim_CAF1 16451 76 + 1 ----------------------------A---AGU-----CGUGCGACUUGAAACGCCCACGGCAUCUGCAGA-AGAACGGCUUCUGUUCUUCGGCGCCC----GAAUUCUUCGGCG ----------------------------.---.((-----((((((........)))..)))))....((.((-(((((((...))))))))).))(((.----((.....))))). ( -26.30) >DroEre_CAF1 16042 105 + 1 -UUUUGCCGCCUUAAAGAAGCC--GCCAA---AAU-----CGUGCGAGUUGAAACGCCCACGGCAACUGCAGA-AGAGCGGCUUCCGUUCUUCGGCGCACGGAAGAAUUCUUCUGUG -....((((.......((((((--((...---..(-----(.(((.(((((...((....)).))))))))))-...)))))))).......)))).((((((((....)))))))) ( -40.94) >DroYak_CAF1 16148 105 + 1 -UUUUACCGCCUUAAAGAAGCC--GGCGA---AGU-----CGUGCGACUUGAAACGCCCACGGCAAUUGCAGA-AGAACGGCUUCUGUUCUUGGACGGCCCGAAGAAUUCUUCUGUG -.....(((((....(((((((--(((((---(((-----(....)))))....))))....((....))...-.....)))))))......)).)))...((((....)))).... ( -33.50) >DroMoj_CAF1 19082 91 + 1 CUCU-UCCU-----------CUUGUC-AAAGUAGUAGUGCGGCGCGUUUUAAAACGCCCGCGGCGA----AGCGAAGGCGGCUUCUGUUCUUUUGCCGCC-----AUU--UU--GCG ....-....-----------...(.(-(((((......((((.(((((....)))))))))((((.----.(((((((.(((....))))))))))))))-----)))--))--)). ( -32.10) >consensus _UUU__CCG____________C__GC__A___AGU_____CGUGCGACUUGAAACGCCCACGGCAACUGCAGA_AGAACGGCUUCUGUUCUUCGGCGCCC____GAAUUCUUCUGCG ...........................................((..........(((...)))....((....(((((((...)))))))...))..................)). (-10.09 = -10.07 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:36 2006