| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,540,941 – 25,541,060 |
| Length | 119 |
| Max. P | 0.572383 |
| Location | 25,540,941 – 25,541,060 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.96 |
| Mean single sequence MFE | -32.83 |
| Consensus MFE | -23.17 |
| Energy contribution | -22.68 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572383 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25540941 119 + 27905053 GAA-AAGGCAGCCUAAACUACUCACGAUCCUUCUGACUUUGGAUCCACUCCGUAUCAUUUCGAUCCUGGGAUAAGGCCAAUCCCAGGAGGGAAGCCAAUACGACCAAGAGGAGAAAUAGC ...-.(((...)))...((.(((..(((((..........))))).....(((((..((((..(((((((((.......)))))))))..))))...))))).....))).))....... ( -33.10) >DroSec_CAF1 24535 119 + 1 GAA-AAGACAGCUUAAACUACUCACGAUCCUUCUGACUUUUCAUCCACUCCGUACUAUUUCGAUCCUGGGAUACGGCCAAUCCCAGGAGGGAAGCCAAUACGACCAAGAGGAGAAACAGC (((-(((.(((.....................))).)))))).....((((...((...(((.(((((((((.......)))))))))((....))....)))...)).))))....... ( -31.50) >DroSim_CAF1 24811 119 + 1 GAA-AAGGCAGCUUAAACUACUCACGCUCCAUCUGACUUUUCUUCCACUCCGGACUAUUUCGGUCCUGGGAUACGGCCAAUCCCAGGAGGGAAGCCAAUACGACCAAGAGGAGAAACAGC ...-..((.(((.............)))))..(((......(((((.(((((((((.....)))))((((((.......))))))))))))))).........((....)).....))). ( -33.62) >DroYak_CAF1 27412 120 + 1 AAAAAAGGAAGUUUAAACAACUUACAUUCCUCCUGAGUUUUCUGCCUUUCCGCUUCAGUUCUAUUCUGGGAGACAGCCAUUCCCAGGAGGGAGGCCAAUAUGACCAAGAGGAGGAACACC ......(((((((.....)))))...((((((((..(((....((((..(.((....))....(((((((((.......))))))))))..))))......)))....))))))))..)) ( -33.10) >consensus GAA_AAGGCAGCUUAAACUACUCACGAUCCUUCUGACUUUUCAUCCACUCCGUACCAUUUCGAUCCUGGGAUACGGCCAAUCCCAGGAGGGAAGCCAAUACGACCAAGAGGAGAAACAGC ...........................(((((.((............................(((((((((.......)))))))))((....))........)).)))))........ (-23.17 = -22.68 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:39:15 2006