Locus 965

Sequence ID 3R_DroMel_CAF1
Location 3,153,924 – 3,154,037
Length 113
Max. P 0.853227
window1543

overview

Window 3

Location 3,153,924 – 3,154,037
Length 113
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 92.56
Mean single sequence MFE -38.38
Consensus MFE -33.09
Energy contribution -32.52
Covariance contribution -0.56
Combinations/Pair 1.13
Mean z-score -1.85
Structure conservation index 0.86
SVM decision value 0.80
SVM RNA-class probability 0.853227
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3153924 113 - 27905053
GGGCUAAUGAUGCAGCCGCAACCUGCGGACCGACCGCUGAUGGAGCUGUAAAUUUGCAACUCAAAUGCAAACAGCGAAGAG-------UAAACGCUCGGCGAUCGCAAUCAGCGGCGCCG
.(((...........((((.....))))...(.((((((((...(((((....(((((.......))))))))))...(((-------(....)))).((....)).)))))))))))). ( -40.90)
>DroSec_CAF1 1813 113 - 1
GGGCUAAUGAUGCAGCCGAAACCUGCAGACCGACCACUGAUGGAGCUGUAAAUUUGCAACACAAAUGCAAACAGCGAACAG-------UAAACGCUCGGCGAUCGCAAUCAGCGGCGCCG
((((......(((((.......)))))........((((.....(((((....(((((.......))))))))))...)))-------)....))))((((.((((.....)))))))). ( -36.50)
>DroSim_CAF1 3983 113 - 1
GGGCUAAUGAUGCAGCCGCAACCUGUGGACCGACCACUGAUGGAGCUGUAAAUUUGCAAGACAAAUGCAAACAGCGAACAG-------UAAACGCUCGGCGAUCGCAAUCAGCGGCGCCG
.((((........))))((..((.((((.....))))....)).(((((....(((((.......))))))))))......-------.....)).(((((.((((.....))))))))) ( -37.10)
>DroYak_CAF1 1106 120 - 1
GAGCUAAUGAUGCAGCCGCAACCUGCGGGCCGACCGCUGAUGGAGCUGUAAAUUUGCAACACAAAUGCAAACAGCGAACAGUAAACAGUAAACGCUCGGCGAUCGCAAUCAGCAGCGCCG
..(((..((((((..((((.....))))(((((.(((((.((..(((((....(((((.......))))))))))...)).....)))....)).)))))....)).))))..))).... ( -39.00)
>consensus
GGGCUAAUGAUGCAGCCGCAACCUGCGGACCGACCACUGAUGGAGCUGUAAAUUUGCAACACAAAUGCAAACAGCGAACAG_______UAAACGCUCGGCGAUCGCAAUCAGCGGCGCCG
((((......(((((.......)))))......(((....))).(((((....(((((.......))))))))))..................))))((((.((((.....)))))))). (-33.09 = -32.52 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:46 2006