a score=0
s 3R_DroMel_CAF1 3153639 118 + 27905053 GUCUGCAUCUGCA--UAUUGAUCUUGCAACUUUUCGCUGCUCCGUUGCACCGUUGCAGCGAUUGAUGUUGUCAAUCAGAGCAGAUUUAAACGAAGGUUAAGAGUUGCAUACGUUUAAUCG
s DroPse_CAF1 26215 91 + 1 GUCU---------------------GCAACGUUUUGCUGGUUCGUUC--------GAUCGAUUGAUGUUGUCAAUCAGAGCAGAUUUAAGCGAAGGUUAAGAGUUGCAUACGUUUAAUCG
s DroPer_CAF1 26378 112 + 1 GUCUGAGUCUGCAAGCAUUGAUCUUGCAACGUUUUGCUGGUUCGUUC--------GAUCGAUUGAUGUUGUCAAUCAGAGCAGAUUUAAGCGAAGGUUAAGAGUUGCAUACGUUUAAUCG