Locus 9630

Sequence ID 3R_DroMel_CAF1
Location 25,443,624 – 25,443,716
Length 92
Max. P 0.542641
window15397

overview

Window 7

Location 25,443,624 – 25,443,716
Length 92
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 81.22
Mean single sequence MFE -19.87
Consensus MFE -15.53
Energy contribution -15.93
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 0.78
SVM decision value 0.02
SVM RNA-class probability 0.542641
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25443624 92 - 27905053
CCAUCCAAGCGCAUUACGCGCAUUCGUUCCGCAUUUCUUUUGGAGCACCCAGUGCCCAUCCCAC---------------UUCUCCACCCCCAACGACGACCUUGGCC
....((((((((.....))))..(((((............(((((.....((((.......)))---------------).)))))........)))))..)))).. ( -17.85)
>DroSec_CAF1 126574 92 - 1
CCAUCCAAGCGCAUUACGCGCAUUCGUUCCGCAUUUCUUGUGGAGCACCCAGUGCCCCUCCCAC---------------UGCUCCGCCCCCAACGACGACCUUGGCC
....((((((((.....))))..((((((((((.....))))))))...(((((.......)))---------------)).............)).....)))).. ( -25.90)
>DroSim_CAF1 128428 92 - 1
CCAUCCAAGCGCAUUACGCGCAUUCGUUCCGCAUUUCUUCUGGAGCACCCAGUGCCCCUCCCCC---------------UGCUCCACCCCCAACGACGACCUUGGCC
....((((((((.....))))..(((((............(((((((.................---------------)))))))........)))))..)))).. ( -19.98)
>DroEre_CAF1 132940 74 - 1
CCAUCCAAGCGCAUUACGCGCAUUCGUUCCGCAUUUCUUCUGGAGCA---------------------------------GCUCCUCCACCCACGACGACCUUGGCC
....((((((((.....))))..(((((............(((((..---------------------------------....))))).....)))))..)))).. ( -15.83)
>DroYak_CAF1 136960 107 - 1
CCAUCCAAGCGCAUUACGCGCAUUCGUUCCGCAUUUCUUCUGGAGCACCCAAUGCCCCUCCCAGUGCUCAUCCUCCCAUUGCUCCUCAUCCCACGACGACCCUGGCC
....(((.((((.....))))..(((((..(((.........((((((...............))))))..........)))............)))))...))).. ( -19.81)
>consensus
CCAUCCAAGCGCAUUACGCGCAUUCGUUCCGCAUUUCUUCUGGAGCACCCAGUGCCCCUCCCAC_______________UGCUCCACCCCCAACGACGACCUUGGCC
....((((((((.....))))..(((((.............(((((..................................))))).........)))))..)))).. (-15.53 = -15.93 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:38:42 2006