Locus 962

Sequence ID 3R_DroMel_CAF1
Location 3,149,488 – 3,149,584
Length 96
Max. P 0.876098
window1540

overview

Window 0

Location 3,149,488 – 3,149,584
Length 96
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 80.94
Mean single sequence MFE -21.62
Consensus MFE -12.52
Energy contribution -14.28
Covariance contribution 1.75
Combinations/Pair 1.00
Mean z-score -2.40
Structure conservation index 0.58
SVM decision value 0.89
SVM RNA-class probability 0.876098
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3149488 96 + 27905053
UUCAUCACAGAAGCCAGUG--ACGACAGACAAUCAGGAAUCGAAUUCGUUUAUUUCGGAUUUUCUUGCUUGGAUGUUUUUAUGGUUUUAUUUCUUUAU
.........(((((((.((--(.((((..(((.(((((...(((((((.......)))))))))))).)))..)))).)))))))))).......... ( -24.80)
>DroSec_CAF1 24649 84 + 1
--------------CAGUGAGAAGACAGACAAUCAGGAAUCGAAUUCGUUUAUUUCGGAUUUUCUUGCUUGCAUGUUUUUAUGGUUUUAUUUCUUUAU
--------------......(((((((..(((.(((((...(((((((.......)))))))))))).)))..))))))).................. ( -17.30)
>DroSim_CAF1 25938 84 + 1
--------------CAGUGAGAAGACAGACAAUCAGGAAUCGAAUUCGUUUAUUUCGGAUUUUCUUGCUUGGAUGUUUUUAUGGUUUUAUUUCUUUAU
--------------......(((((((..(((.(((((...(((((((.......)))))))))))).)))..))))))).................. ( -19.00)
>DroEre_CAF1 26916 93 + 1
UUCAUCGCAGAAGCCC-----AUGACAGACAAUCAGGAAUCGAAUUCGCUUAAUUCCGAGUUUCUUUCUUGGAUGUUUUUAUGGUUUUAUUCCUCUGU
......(((((((.((-----((((.(((((.(((((((..(((((((........)))))))..))))))).))))))))))).))......))))) ( -25.40)
>consensus
______________CAGUG__AAGACAGACAAUCAGGAAUCGAAUUCGUUUAUUUCGGAUUUUCUUGCUUGGAUGUUUUUAUGGUUUUAUUUCUUUAU
....................(((((((..(((.(((((...(((((((.......)))))))))))).)))..))))))).................. (-12.52 = -14.28 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:43 2006