Locus 9615

Sequence ID 3R_DroMel_CAF1
Location 25,400,263 – 25,400,354
Length 91
Max. P 0.702279
window15366

overview

Window 6

Location 25,400,263 – 25,400,354
Length 91
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 78.82
Mean single sequence MFE -29.73
Consensus MFE -19.75
Energy contribution -19.58
Covariance contribution -0.17
Combinations/Pair 1.08
Mean z-score -1.42
Structure conservation index 0.66
SVM decision value 0.35
SVM RNA-class probability 0.702279
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25400263 91 - 27905053
GUAGCGCCUGGCCGGAGUGAGAAAUUCUGAUGGGUUUCUUAUUUGCUUGGCUCGGCUUUU----UUGCAUAUGUCC--------AGC--CAGUCAGU-GAGUC--CAG--
...((.((((((..(((((((((((((....)))))))))))))...(((((.(((....----........))).--------)))--))))))).-).)).--...-- ( -28.50)
>DroVir_CAF1 99817 79 - 1
GUAGCGCCUGGUCGGAGUGAGAAAUUCUGAUGGGUUUCUUAUUUGCUUCGCUCGGCCUGU----UUGCAUAUGUCC--------GGUCGCA-------------------
...(((.((((.(((((((((((((((....)))))))))))))((...((.......))----..))...)).))--------)).))).------------------- ( -25.90)
>DroGri_CAF1 97162 87 - 1
GUAGCGCCUGGUCGGAGUGAGAAAUUCUGAUGGGUUUCUUAUUUGCUUCGCUCGGCCUGUUUGUUUGCAUAUGUCC--------GGUCGCAGUC-------------G--
...(((((.((((((((((((((((((....)))))))))))))((...)).)))))(((......))).......--------)).)))....-------------.-- ( -26.60)
>DroSim_CAF1 84572 99 - 1
GUAGCGCCUGGCCGGAGUGAGAAAUUCUGAUGGGUUUCUUAUUUGCUUGGCUCGGCUUUU----UUGCAUAUGUCCGGCCAGUCAGC--CAGUCAGG-GAGUC--AGG--
......(((((((.(((((((((((((....))))))))))))).(((((((.((((..(----(.((.........)).))..)))--))))))))-).)))--)))-- ( -36.30)
>DroMoj_CAF1 101639 79 - 1
AUAGCGCCUGGCCGGAGUGAGAAAUUCUGAUGGGUUUCUUAUUUGCUUCGCUCGGCCAGU----UUGCAUAUGUCC--------GGUCGCA-------------------
...((((((((((((((((((((((((....)))))))))))))((...)).))))))(.----...)........--------)).))).------------------- ( -28.90)
>DroPer_CAF1 91486 95 - 1
GUAGCGCCUGGUCGGAGUGAGAAAUUCUGAUGGGU-UCUUAUUUGCUUGGCUCGGCUUUU----UUGCAUAUGUCC--------GGC--CAGUCAGCAGAGCCCCAGCCC
.......(((((((((((.....))))))))((((-(((...(((.((((((.(((....----........))).--------)))--))).))).))))))))))... ( -32.20)
>consensus
GUAGCGCCUGGCCGGAGUGAGAAAUUCUGAUGGGUUUCUUAUUUGCUUCGCUCGGCCUGU____UUGCAUAUGUCC________GGC__CAGUC_____________G__
((((.....((((((((((((((((((....)))))))))))))((...)).))))).......)))).......................................... (-19.75 = -19.58 +  -0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:38:17 2006