Locus 960

Sequence ID 3R_DroMel_CAF1
Location 3,144,218 – 3,144,325
Length 107
Max. P 0.523899
window1537

overview

Window 7

Location 3,144,218 – 3,144,325
Length 107
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 88.99
Mean single sequence MFE -18.15
Consensus MFE -12.80
Energy contribution -14.42
Covariance contribution 1.62
Combinations/Pair 1.04
Mean z-score -1.57
Structure conservation index 0.70
SVM decision value -0.02
SVM RNA-class probability 0.523899
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3144218 107 - 27905053
ACUCGUCUUAAGCUGCAGACAUCGUCCCAUGACCAUUAUACGUCAUUAGCAUCCAAGUCUCCCAGCUCCUUAUCUAUACUAUAUAUGUACUAUAUAUGUAGCUGACA-
....(((...(((((.((((........(((((........)))))..........))))..)))))...........((((((((((...))))))))))..))).- ( -20.87)
>DroSec_CAF1 19608 107 - 1
ACUCGUCUUAAUCUGCAGACAUCGUCCCAUGACCAUUAUACGUCAUUAGCAUCCAAGUCUCCCAGCUCCUUAUCCAUACUAUAUAUGUACUAUAUGUGUAGCUGACA-
....(((.....(((.((((........(((((........)))))..........))))..))).............((((((((((...))))))))))..))).- ( -15.97)
>DroSim_CAF1 20848 107 - 1
ACUCGUCUUAAGCUGCAGACAUCGUCCCAUGACCAUUAUACGUCAUUAGCAUCCAAGUCUCCCAGCUCCUUAUCCAUACUAUAUAUGUACUAUAUGUGUAGCUGACA-
....(((...(((((.((((........(((((........)))))..........))))..)))))...........((((((((((...))))))))))..))).- ( -20.87)
>DroEre_CAF1 21734 96 - 1
ACUCGUCUUGAGCUGCAGACAUCGUCCCAUGACCAUUAUGCACCAUUAGCAUCCAAGUCUCCCAGAUUCUUAUCUAUACUAUA------------AUGUAUCUGACAA
....(((..((((((.((((...(((....)))....((((.......))))....))))..))).)))......((((....------------..))))..))).. ( -14.90)
>consensus
ACUCGUCUUAAGCUGCAGACAUCGUCCCAUGACCAUUAUACGUCAUUAGCAUCCAAGUCUCCCAGCUCCUUAUCCAUACUAUAUAUGUACUAUAUAUGUAGCUGACA_
....(((...(((((.((((........(((((........)))))..........))))..)))))...........((((((((((...))))))))))..))).. (-12.80 = -14.42 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:40 2006